# List of top-scoring protein chains for t04-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3b77A 193 4.13e-09 1zsqA 528 0.6649 b.55.1.8,c.45.1.3 125616,125617 1h4rA 314 1.036 a.11.2.1,b.55.1.5,d.15.1.4 65616,65617,65618 1lw3A 657 1.061 b.55.1.8,c.45.1.3 91152,91153 1gg3A 279 2.159 a.11.2.1,b.55.1.5,d.15.1.4 16372,27007,37615 2hthB 140 2.670 b.55.1.12 136743 1ef1A 294 2.737 a.11.2.1,b.55.1.5,d.15.1.4 16368,27003,37611 2cayA 145 2.848 b.55.1.12 130167 1mixA 206 4.550 a.11.2.1,b.55.1.5 79166,79167 1p5tA 127 5.209 b.55.1.2 94148 1n5nA 180 5.894 d.167.1.1 85336 1azpA 66 6.090 b.34.13.1 37467 2gclA 261 6.631 b.55.1.10 134991 2al6A 375 7.134 a.11.2.1,b.55.1.5,d.15.1.4 126966,126967,126968 1y6hA 177 8.132 d.167.1.1 116505 2h7dA 101 8.153 1xyiA 66 8.299 2he7A 283 8.741 1btkA 169 9.014 b.55.1.1 26959 1ntyA 311 9.98 a.87.1.1,b.55.1.1 103873,103874 1eazA 125 10.94 b.55.1.1 70113 3by4A 212 13.62 1rl4A 188 14.11 d.167.1.1 97636 1xeoA 168 14.84 d.167.1.1 121913 1kz7A 353 15.44 a.87.1.1,b.55.1.1 73333,73334 1irsA 112 16.33 b.55.1.2 26991 1bs4A 168 17.65 d.167.1.1 42287 1mai 131 19.01 1lqyA 184 19.48 d.167.1.1 74212 1w1hA 151 19.71 b.55.1.1 114076 1ebfA 358 20.37 c.2.1.3,d.81.1.2 30033,39948 2v8pA 271 20.63 2dfkA 402 21.83 2z0qA 346 25.82 3bs1A 103 26.13 1x3mA 415 27.94 c.55.1.2,c.55.1.2 121664,121665 1j0wA 103 28.00 b.55.1.2 90748 2e1zA 415 28.54 2q4kA 251 32.46 d.86.1.2 139864 2gk4A 232 32.64 1apyA 162 33.02 d.153.1.5 42004 2ga9A 297 35.23 c.66.1.25 134885 2ddmA 283 35.44 1u7zA 226 35.68 c.72.3.1 113107 2d4qA 257 36.32 2v76A 107 38.10 1ki1B 352 38.79 a.87.1.1,b.55.1.1 72497,72498 1f9rA 70 40.88 d.9.1.1 90484 2ew5A 181 43.69 1nbwA 607 43.73 c.8.6.1,c.55.1.6,c.55.1.6 80393,80394,80395 2nybA 192 50.88 a.2.11.1,d.44.1.1 138804,138805 1v8aA 265 52.55 c.72.1.2 100494 2cxhA 217 53.05 c.51.1.2 131005 2v1yA 108 53.99 1maiA 131 57.12 b.55.1.1 26951 2nptB 100 60.11 d.15.2.2 138449 1g99A 408 61.53 c.55.1.2,c.55.1.2 33457,33458 1vptA 348 62.47 c.66.1.25 34207 1z3eA 132 62.60 c.47.1.12 124400 1c8cA 64 62.79 b.34.13.1 59084 1j5pA 253 65.48 d.81.1.3,c.2.1.3 71577,83092 2hwkA 320 65.68 1v2yA 105 66.00 d.15.1.1 100275 1wmhB 86 66.91 d.15.2.2 114745 1usuA 260 67.55 d.14.1.8 99885 1yr0A 175 67.81 d.108.1.1 123905 2oklA 185 69.31 2g35A 100 70.35 b.55.1.5 134548 1iscA 192 71.57 a.2.11.1,d.44.1.1 15733,38726 1yiqA 689 72.96 1eo6A 117 75.03 d.15.1.3 37609 1v3yA 192 75.13 d.167.1.1 113508 1v86A 95 76.36 d.15.1.1 108421 2f57A 317 77.71 2jqoA 108 79.29 1yfqA 342 79.78 b.69.4.2 116680 2bkkA 264 81.72 2nz8B 313 82.71 a.87.1.1,b.55.1.1 138838,138839 1hy5A 136 84.85 a.24.11.1 65955 1wf9A 107 87.10 d.15.1.1 120968 1ws0A 156 87.30 2a0jA 149 87.50 1dynA 125 88.09 b.55.1.1 26955 1wvhA 134 88.60 b.55.1.2 121341 1yqbA 100 89.72 d.15.1.1 123876 1vi3A 170 89.95 b.17.1.2 100730