# List of top-scoring protein chains for t2k-w0.5-1-alpha-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1ekfA	365	4.502	e.17.1.1	59445
1ri7A	171	9.049	a.4.5.32,d.58.4.2	97504,97505
1i1gA	141	15.23	a.4.5.32,d.58.4.2	65982,65983
2cg4A	152	15.98	a.4.5.32,d.58.4.2	130417,130418
1h5wA	309	18.71	e.27.1.1	65635
2qz8A	149	20.66		
2ozbB	260	23.94		
2ivmA	150	24.19		
2cyyA	151	25.67	a.4.5.32,d.58.4.2	131028,131029
2dbbA	151	30.91		
2f2aB	483	34.78	a.182.1.2,d.128.1.5	132802,132803
2imjA	166	35.70		
1uf2C	421	40.51	a.115.1.3,b.19.1.1	99291,99292
2p5vA	162	40.60		
2gqqA	163	43.08		
1h54A	754	43.36	a.102.1.4,b.30.5.3	60634,60635
1tvlA	454	43.74	c.1.16.4	107366
2cfxA	144	46.69	a.4.5.32,d.58.4.2	130395,130396
2p5yA	311	50.72		
1oivA	191	52.61	c.37.1.8	93076
1rz3A	201	54.94	c.37.1.6	98132
1rzhL	281	60.83	f.26.1.1	98164
2o7oA	207	63.26	a.4.1.9,a.121.1.1	138930,138931
2uxuA	210	64.20		
1u04A	771	64.68	b.34.14.1,c.55.3.10	107539,107540
2cviA	83	66.87		
2pzmA	330	67.40		
2qaiA	111	68.55		
3bcgA	215	68.97		
2zb9A	214	70.40		
1pe1A	267	70.44	c.1.10.4	94591
2ia0A	171	72.08		
1fj2A	232	75.00	c.69.1.14	34720
2fywA	267	75.45	c.135.1.1	134408
1nf3A	195	76.73	c.37.1.8	85594
2jisA	515	77.93		
2qbvA	90	79.27		
2d5rA	252	81.54		
1ktgA	138	87.98	d.113.1.1	72972