# List of top-scoring protein chains for t2k-w0.5-1-CB8-sep9-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1ri7A	171	6.137	a.4.5.32,d.58.4.2	97504,97505
2imjA	166	11.16		
1byqA	228	18.83	d.122.1.1	41100
2qz8A	149	21.19		
2cg4A	152	26.04	a.4.5.32,d.58.4.2	130417,130418
1r5tA	142	26.38	c.97.1.1	104812
1d9eA	284	27.23	c.1.10.4	29195
2ivmA	150	28.12		
2ia0A	171	30.44		
1uwzA	136	32.27	c.97.1.1	108081
1h5wA	309	32.64	e.27.1.1	65635
1k8kB	394	33.36	c.55.1.1	68307
1i1gA	141	34.02	a.4.5.32,d.58.4.2	65982,65983
1jtkA	136	38.86	c.97.1.1	71862
1ekfA	365	39.47	e.17.1.1	59445
2dbbA	151	40.78		
2cyyA	151	42.07	a.4.5.32,d.58.4.2	131028,131029
2fn4A	181	44.26	c.37.1.8	133806
1um0A	365	45.87	d.258.1.1	107942
1aquA	297	46.71	c.37.1.5	31942
1ea3A	164	49.21	a.95.1.1	59398
2gqqA	163	51.85		
2pbzA	320	54.79		
2eryA	172	55.54	c.37.1.8	132306
1wlqC	201	60.20	a.4.5.52	109400
2vduE	254	61.97		
1fouA	309	66.49	e.27.1.1	43364
1pe1A	267	66.91	c.1.10.4	94591
2f2aB	483	69.31	a.182.1.2,d.128.1.5	132802,132803
1uf2C	421	70.19	a.115.1.3,b.19.1.1	99291,99292
1fjcA	96	70.71	d.58.7.1	39212
1mvlA	209	72.67	c.34.1.1	85146
1p9bA	442	73.27	c.37.1.10	94385
1rx0A	393	73.83	a.29.3.1,e.6.1.1	98007,98008
1atnA	373	76.17	c.55.1.1,c.55.1.1	33437,33438
1whrA	124	77.40	d.68.7.1	114650
2fal	147	77.70		
1iweA	457	78.81	c.37.1.10	71486
1k6kA	143	78.89	a.174.1.1	77274
1aa7A	158	79.05	a.95.1.1	18741
1lbqA	362	79.70	c.92.1.1	77877
2zb9A	214	80.17		
1kg0C	136	80.84	d.169.1.1	72445
2qaiA	111	83.86		
3bu8A	235	86.82		
1z5zA	271	89.17	c.37.1.19	124499