# List of top-scoring protein chains for t2k-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1j8iA 93 1.650 d.9.1.1 66438 1earA 147 6.975 b.107.1.1,d.58.38.1 64875,64876 2d1vA 108 8.593 3bp1A 290 9.926 2p5vA 162 10.23 3bz6A 183 10.60 1d0nA 729 12.01 d.109.1.1,d.109.1.1,d.109.1.1,d.109.1.1,d.109.1.1,d.109.1.1 40834,40835,40836,40837,40838,40839 1oisA 223 12.25 e.15.1.1 43267 1mg4A 113 12.80 d.15.11.1 84953 1ignA 246 13.42 a.4.1.6,a.4.1.6 16048,16049 1ztdA 133 13.48 a.149.1.2 125639 1zzwA 149 15.19 1ois 223 15.49 2nt2A 145 15.88 2pmuA 110 16.40 2nmmA 135 16.55 d.322.1.1 138372 2e7xA 150 17.46 2z0tA 109 17.52 1d4xG 126 17.82 d.109.1.1 59109 2ivmA 150 18.66 2pn6A 150 18.92 2i46A 161 19.19 2hciA 69 20.73 d.9.1.1 136336 2dbbA 151 22.42 1sd4A 126 23.06 a.4.5.39 105428 1opcA 110 23.19 a.4.6.1 16231 1h5qA 265 24.75 c.2.1.2 60643 1a36A 592 25.07 a.2.8.1,d.163.1.2,e.15.1.1 15715,42173,43266 1amuA 563 26.58 e.23.1.1 43351 2comA 124 27.40 a.4.1.18 130679 1cm9A 74 28.17 d.9.1.1 37405 1se9A 126 28.30 d.15.1.1 98821 1aquA 297 28.76 c.37.1.5 31942 1qqiA 104 30.28 a.4.6.1 16233 1opc 110 30.39 1xvwA 160 30.50 c.47.1.10 122387 2qipA 165 32.01 2agkA 260 32.07 2cyyA 151 32.39 a.4.5.32,d.58.4.2 131028,131029 1u6bA 98 33.27 d.58.7.1 107703 2ia0A 171 33.40 1q67A 231 34.41 b.55.1.7 95960 1ri7A 171 35.35 a.4.5.32,d.58.4.2 97504,97505 1ryc 294 37.34 2ho4A 259 37.56 1qgoA 264 38.20 c.92.1.2 35596 1f2lA 76 40.46 d.9.1.1 37436 2zcuA 286 41.13 1nm1G 125 42.43 d.109.1.1 80653 2hwvA 121 42.64 1gk9A 260 44.26 d.153.1.2 65246 1i1gA 141 45.31 a.4.5.32,d.58.4.2 65982,65983 1k4tA 592 45.31 a.2.8.1,d.163.1.2,e.15.1.1 77263,77264,77265 1q32A 544 45.64 d.136.1.3,d.136.1.3 104507,104508 1sflA 238 46.64 c.1.10.1 112077 2cunA 410 47.77 2hcmA 164 47.87 2qiaA 262 48.43 1icwA 72 49.68 d.9.1.1 37357 1mk0A 97 49.85 d.226.1.1 79216 1m8aA 70 50.28 d.9.1.1 74579 2f46A 156 50.92 2gwhA 298 51.46 2c46A 241 52.78 1hynP 379 53.26 d.112.1.2 61408 3cawA 330 53.50 1dokA 77 56.05 d.9.1.1 37420 2cg4A 152 56.30 a.4.5.32,d.58.4.2 130417,130418 1tc3C 51 56.78 a.4.1.2 16025 1vjlA 164 57.15 d.257.1.1 100822 3c57A 95 58.72 1cnuA 137 58.80 d.109.1.2 40862 1v6sA 390 60.27 c.86.1.1 100424 2qklA 127 63.44 1qycA 308 64.59 c.2.1.2 96581 1wrjA 156 65.01 2o56A 407 65.14 1xvqA 175 65.57 c.47.1.10 116094 2ovkC 159 66.18 2uzpA 144 67.75 1zyeA 220 67.76 c.47.1.10 125817 1q1rA 431 68.17 c.3.1.5,c.3.1.5,d.87.1.1 95600,95601,95602 2yzhA 171 69.96 1gmuA 143 70.03 b.107.1.1,d.58.38.1 65335,65336 2p12A 176 70.37 2pfkA 320 70.61 c.89.1.1 35577 1gxqA 106 71.27 a.4.6.1 70721 2cx4A 164 73.54 c.47.1.10 130973 2qz8A 149 73.64 2esbA 188 76.40 1je8A 82 76.60 a.4.6.2 77108 2vil 126 77.47 1oohA 126 80.01 a.39.2.1 93383 3cklA 298 80.32 1zupA 315 83.82 c.55.3.11 125681 1iejA 332 88.88 c.94.1.2 62328 2yqzA 263 89.90