a2m2html output for tmp.a2m

Citations (SAM, SAM-T99, HMMs)

R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting remote protein homologies, Bioinformatics 14(10):846-856, 1998.
A. Krogh et al., Hidden Markov models in computational biology: Applications to protein modeling, JMB 235:1501-1531, Feb 1994.

Sequence numbers correspond to the following labels:

- T0443
- gi|121635788|ref|YP_976033.1|_127:255 hypothetical protein NMC2122 [Neisseria meningitidis FAM18]
- gi|120867494|emb|CAM11271.1| hypothetical protein [Neisseria meningitidis FAM18]
- gi|15793251|ref|NP_283073.1|_120:248 hypothetical protein NMA0229 [Neisseria meningitidis Z2491]
- gi|161871006|ref|YP_001600186.1| hypothetical protein NMCC_2102 [Neisseria meningitidis 053442]
- gi|121051264|emb|CAM07539.1| hypothetical protein NMA0229 [Neisseria meningitidis Z2491]
- gi|161596559|gb|ABX74219.1| conserved hypothetical protein [Neisseria meningitidis 053442]
- gi|59802257|ref|YP_208969.1|_120:248 hypothetical protein NGO1945 [Neisseria gonorrhoeae FA 1090]
- gi|59719152|gb|AAW90557.1| conserved hypothetical protein [Neisseria gonorrhoeae FA 1090]
- gi|15677956|ref|NP_275128.1|_120:248 hypothetical protein NMB2143 [Neisseria meningitidis MC58]
- gi|7227400|gb|AAF42451.1| conserved hypothetical protein [Neisseria meningitidis MC58]

                 10        20        30        40        50        60  
                 |         |         |         |         |         |  
   1 ...DIPDIHYSNDSKYTPSPAAFIRQYRYDVTHDLQEAETALLIWRNAEDDVMYQTLDGFDMMLL
   2 qipDIPDIHYSNDSKYTPSPAAFIRQYRYDVTDDLHEAETALLIWRNAEDDVMYQTLDGFDMMLL
   3 qipDIPDIHYSNDSKYTPSPAAFIRQYRYDVTDDLHEAETALLIWRNAEDDVMYQTLDGFDMMLL
   4 qipDIPDIHYSNDSKYTPSPAAFIRQYRYDVTHDLQEAETALLIWRNAEDDVMYQTLDGFDMMLL
   5 qipDIPDIHYSNDSKYTPSPAAFIRQYRYDVTDDLHEAETALLIWRNAEDDVMYQTLDGFDMMLL


            70        80        90       100       110       120       
            |         |         |         |         |         |       
   1 EIMGSSALSFDTLAQTLVEFMPKADNWKNILLGKWSGWIEQRIIIPSLSAISENMEGNSPSQNHL
   2 EIMGSSALSFDTLAQTLVEFMPEDDNWKNILLGKWSGWTEQRIIIPSLSAISENMEGNSPGQNHL
   3 EIMGSSALSFDTLAQTLVEFMPEDDNWKNILLGKWSGWTEQRIIIPSLSAISENMEGNSPGQNHL
   4 EIMGSSALSFDTLAQTLVEFMPKADNWKNILLGKWSGWIEQRIIIPSLSAISENMEGNSPSQNHL
   5 EIMGFSALSFDTLAQTLVEFMPEDDNWKNILLGKWSGWTEQRIIIPSLSAISENMEDNSPGQNHL


        
       
   1 SA
   2 SA
   3 SA
   4 SA
   5 SA