# List of top-scoring protein chains for t06-w0.5-1-str4-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1b0uA	262	11.84	c.37.1.12	32370
1z2aA	168	15.37	c.37.1.8	124374
2hy5B	136	18.58	c.114.1.1	136866
3c9pA	123	19.94		
1heiA	451	23.67	c.37.1.14,c.37.1.14	32463,32464
1ispA	181	26.00	c.69.1.18	76778
2r76A	152	29.27		
2ipiA	521	34.84		
2erxA	172	35.29	c.37.1.8	132304
1xt8A	292	40.98	c.94.1.1	122293
3b7nA	320	42.39		
1jpyA	137	43.26	g.17.1.6	67065
1lrzA	426	44.17	a.2.7.4,d.108.1.4,d.108.1.4	78167,78168,78169
1i2mA	216	45.50	c.37.1.8	61568
2qx5A	661	50.87		
2z84A	218	51.64		
2gj8A	172	59.32	c.37.1.8	135270
1z4hA	66	60.26		
1f9mA	112	69.12	c.47.1.1	32736
1sfnA	246	75.04	b.82.1.11	105496
1pujA	282	75.09	c.37.1.8	88294
2g6bA	180	75.72	c.37.1.8	134701
2cxxA	190	77.54	c.37.1.8	131013
2ga8A	359	78.79		
2fddA	100	82.28		
1h3lA	87	88.52	a.177.1.1	76639