# List of top-scoring protein chains for t06-w0.5-1-str2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1b0uA	262	14.34	c.37.1.12	32370
1z2aA	168	14.76	c.37.1.8	124374
1ispA	181	17.45	c.69.1.18	76778
3c9pA	123	20.31		
1heiA	451	21.66	c.37.1.14,c.37.1.14	32463,32464
2ipiA	521	21.82		
2r76A	152	26.31		
1pujA	282	27.82	c.37.1.8	88294
1lrzA	426	28.36	a.2.7.4,d.108.1.4,d.108.1.4	78167,78168,78169
2erxA	172	39.73	c.37.1.8	132304
2hy5B	136	41.53	c.114.1.1	136866
1f9mA	112	41.87	c.47.1.1	32736
2gj8A	172	44.17	c.37.1.8	135270
3b7nA	320	58.69		
2px2A	269	59.73		
1rzuA	485	64.77	c.87.1.8	105140
1z4hA	66	68.95		
2fwhA	134	69.76	c.47.1.1	134242
1i2mA	216	71.37	c.37.1.8	61568
1ad2A	228	76.58	e.24.1.1	43353
2q3fA	181	78.14		
2daqA	110	78.20	b.34.9.2	131354
1jpyA	137	79.67	g.17.1.6	67065
2fddA	100	81.52		
1xt8A	292	81.88	c.94.1.1	122293
1ppjJ	62	84.80	f.23.14.1	104266
2qn6A	414	87.43		
1sfnA	246	88.12	b.82.1.11	105496