# List of top-scoring protein chains for t06-w0.5-1-o_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1b0uA	262	21.17	c.37.1.12	32370
2ipiA	521	23.78		
1heiA	451	25.38	c.37.1.14,c.37.1.14	32463,32464
2fwhA	134	32.15	c.47.1.1	134242
1ispA	181	32.48	c.69.1.18	76778
1z2aA	168	32.89	c.37.1.8	124374
3c9pA	123	34.55		
2qx5A	661	35.75		
1f9mA	112	39.48	c.47.1.1	32736
3b7nA	320	43.10		
2hy5B	136	50.15	c.114.1.1	136866
1lrzA	426	51.72	a.2.7.4,d.108.1.4,d.108.1.4	78167,78168,78169
1pujA	282	57.54	c.37.1.8	88294
1xt8A	292	61.05	c.94.1.1	122293
1z4hA	66	61.58		
1jpyA	137	65.99	g.17.1.6	67065
1wouA	123	66.31	c.47.1.16	109471
2px2A	269	67.10		
1khyA	148	67.58	a.174.1.1	77410
2z84A	218	68.48		
1svmA	377	73.16	c.37.1.20	112126
2q3fA	181	74.28		
2erxA	172	75.97	c.37.1.8	132304
1fmb	104	78.45		
1rzuA	485	84.14	c.87.1.8	105140
2gj8A	172	86.82	c.37.1.8	135270