# List of top-scoring protein chains for T0443.t04-w0.5 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1ql0A	241	20.60	d.4.1.2	37139
1g8tA	245	21.72	d.4.1.2	37137
1k1tA	99	37.88	b.50.1.1	71995
1jdlA	121	50.51	a.3.1.1	66557
1dazC	99	58.94	b.50.1.1	26501
1k1uA	99	59.05	b.50.1.1	71997
2avvA	99	60.04		
1k2cA	99	61.61	b.50.1.1	72008
2rk9A	145	63.18		
2re2A	136	63.82		
2o4nA	99	72.39		
2nmzA	99	77.77	b.50.1.1	138386
1aaqA	99	84.82	b.50.1.1	26688
2nnpA	99	85.14	b.50.1.1	138397
2nmwA	99	86.35	b.50.1.1	138380
1sduA	99	86.37	b.50.1.1	105444
1q9pA	95	86.84	b.50.1.1	96300
1gnnA	99	87.26	b.50.1.1	26676
2pk6A	99	87.30	b.50.1.1	139705
2fleA	99	87.59		
1ebkC	99	87.77	b.50.1.1	26610
1k2bA	99	87.91	b.50.1.1	72006
1fg6C	99	88.16	b.50.1.1	59817
1hvsA	99	88.17	b.50.1.1	26597
2avsA	99	88.18		
1gnmA	99	89.79	b.50.1.1	26672
1mrxA	99	89.83	b.50.1.1	91449