# List of top-scoring protein chains for t04-w0.5-1-str4-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1a6f	119	5.582		
1dazC	99	10.14	b.50.1.1	26501
1uc7A	125	16.51	c.47.1.1	99163
1nh0A	99	21.74	b.50.1.1	91869
2hs1A	99	24.50		
1z2aA	168	25.56	c.37.1.8	124374
2fxdA	99	26.61		
3c9pA	123	27.36		
1khyA	148	27.80	a.174.1.1	77410
1kzkA	99	29.95	b.50.1.1	73371
1ispA	181	36.95	c.69.1.18	76778
2jdiA	510	38.40		
1vplA	256	41.57	c.37.1.12	113966
2fazA	78	43.82	d.15.1.1	133223
2yysA	286	46.18		
2fncA	381	47.14		
1z4hA	66	47.52		
1kb9I	55	49.11	f.23.14.1	77324
1v1aA	309	50.10	c.72.1.1	100249
3b7nA	320	55.76		
1luzA	88	56.83	b.40.4.5	74271
1tvjA	166	60.94		
1n62A	166	63.64	a.56.1.1,d.15.4.2	80090,80091
2h00A	254	64.09	c.66.1.54	135925
1ni5A	433	70.38	b.153.1.2,d.229.1.1,c.26.2.5	111592,111593,80533
1sw2A	275	71.83	c.94.1.1	106064
2fkkA	206	76.84		
1h6oA	204	79.59	a.146.1.1	60689
2hc0A	99	84.71		
1kjwA	295	88.25	b.34.2.1,c.37.1.1	68643,68644