# List of top-scoring protein chains for t04-w0.5-1-str2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1a6f	119	5.924		
1dazC	99	6.458	b.50.1.1	26501
1uc7A	125	6.543	c.47.1.1	99163
1vplA	256	10.79	c.37.1.12	113966
3c9pA	123	15.45		
1khyA	148	16.59	a.174.1.1	77410
1nh0A	99	20.08	b.50.1.1	91869
2fxdA	99	21.52		
1z2aA	168	21.89	c.37.1.8	124374
2hs1A	99	22.12		
1ispA	181	26.73	c.69.1.18	76778
2jdiA	510	26.94		
1kzkA	99	27.17	b.50.1.1	73371
2fncA	381	29.29		
1kb9I	55	30.42	f.23.14.1	77324
2r76A	152	33.88		
2fazA	78	36.65	d.15.1.1	133223
1ni5A	433	45.57	b.153.1.2,d.229.1.1,c.26.2.5	111592,111593,80533
3b7nA	320	49.13		
1z4hA	66	50.75		
1tvjA	166	51.82		
1n62A	166	59.59	a.56.1.1,d.15.4.2	80090,80091
1sz2A	332	62.56	c.55.1.7	112169
2j9jA	99	63.94		
1c9oA	66	64.91	b.40.4.5	25325
1ppjJ	62	67.19	f.23.14.1	104266
3bu8A	235	68.22		
2fwhA	134	68.42	c.47.1.1	134242
2c82A	413	72.16		
2iyvA	184	73.59	c.37.1.2	137812
1v1aA	309	73.60	c.72.1.1	100249
1ji0A	240	74.52	c.37.1.12	71665
2yysA	286	75.96		
1y0pA	571	76.16	a.138.1.3,c.3.1.4,d.168.1.1	122507,122508,122509
2hc0A	99	77.57		
3cx5I	65	78.26		
3csvA	333	80.88		
2fkkA	206	81.77