# List of top-scoring protein chains for t04-w0.5-1-o_notor2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1a6f	119	10.50		
1uc7A	125	10.58	c.47.1.1	99163
1dazC	99	11.34	b.50.1.1	26501
1khyA	148	13.75	a.174.1.1	77410
1nh0A	99	22.45	b.50.1.1	91869
2fxdA	99	27.45		
3c9pA	123	27.72		
1kzkA	99	30.18	b.50.1.1	73371
2hs1A	99	30.32		
2jdiA	510	32.12		
1z4hA	66	37.38		
1kb9I	55	40.46	f.23.14.1	77324
1z2aA	168	41.19	c.37.1.8	124374
1ispA	181	49.43	c.69.1.18	76778
2yysA	286	50.33		
2h00A	254	53.63	c.66.1.54	135925
1h6oA	204	66.37	a.146.1.1	60689
3b7nA	320	67.26		
1tvjA	166	70.06		
3bu8A	235	72.69		
2c82A	413	73.22		
1v1aA	309	73.45	c.72.1.1	100249
2r76A	152	74.74		
1xt8A	292	76.15	c.94.1.1	122293
2fwhA	134	78.25	c.47.1.1	134242
1luzA	88	79.21	b.40.4.5	74271
1vplA	256	81.85	c.37.1.12	113966
2fncA	381	82.02		
2fkkA	206	82.65