# List of top-scoring protein chains for t04-w0.5-1-o_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1dazC	99	10.03	b.50.1.1	26501
1a6f	119	10.51		
1uc7A	125	16.98	c.47.1.1	99163
1nh0A	99	21.89	b.50.1.1	91869
1khyA	148	23.05	a.174.1.1	77410
2fxdA	99	25.04		
2hs1A	99	26.77		
1kzkA	99	29.28	b.50.1.1	73371
3c9pA	123	36.82		
2yysA	286	37.42		
1z2aA	168	40.05	c.37.1.8	124374
2h00A	254	48.58	c.66.1.54	135925
1ispA	181	49.30	c.69.1.18	76778
2jdiA	510	50.85		
1z4hA	66	51.58		
1kb9I	55	52.08	f.23.14.1	77324
2fncA	381	58.89		
2fazA	78	76.81	d.15.1.1	133223
1v1aA	309	83.22	c.72.1.1	100249
3b7nA	320	83.25		
2c82A	413	85.92		
1h6oA	204	86.57	a.146.1.1	60689
1kjwA	295	87.27	b.34.2.1,c.37.1.1	68643,68644
2j9jA	99	87.79