# List of top-scoring protein chains for t04-w0.5-1-near-backbone-11-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1ispA	181	9.453	c.69.1.18	76778
1a6f	119	9.484		
1khyA	148	11.08	a.174.1.1	77410
2hs1A	99	26.44		
1dazC	99	27.55	b.50.1.1	26501
1vplA	256	31.52	c.37.1.12	113966
3c9pA	123	32.68		
1uc7A	125	36.22	c.47.1.1	99163
1ni5A	433	38.86	b.153.1.2,d.229.1.1,c.26.2.5	111592,111593,80533
1z4hA	66	40.36		
1i6wA	181	43.38	c.69.1.18	61859
1v1aA	309	46.62	c.72.1.1	100249
2fxdA	99	50.03		
1tvjA	166	55.07		
2ouiA	360	61.16		
1luzA	88	61.89	b.40.4.5	74271
2c82A	413	62.12		
2fkkA	206	63.09		
1kjwA	295	65.35	b.34.2.1,c.37.1.1	68643,68644
1pjaA	302	71.21	c.69.1.13	94758
1kzkA	99	74.02	b.50.1.1	73371
1nh0A	99	77.28	b.50.1.1	91869
1z2aA	168	78.69	c.37.1.8	124374
1t3kA	152	82.03	c.46.1.1	106357
2h00A	254	83.83	c.66.1.54	135925
1k8kF	168	89.10	d.198.2.1	68312