# List of top-scoring protein chains for t04-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1g5aA 628 3.092 b.71.1.1,c.1.8.1 65152,65153 1a6f 119 3.510 2fazA 78 3.936 d.15.1.1 133223 1uvjA 664 5.788 e.8.1.6 100045 2nsmA 439 6.417 3c9pA 123 7.755 1dazC 99 8.594 b.50.1.1 26501 2vapA 364 9.095 1v1aA 309 10.58 c.72.1.1 100249 1khyA 148 11.12 a.174.1.1 77410 1wl9A 440 12.85 c.55.2.1,d.127.1.1 120998,120999 1xdpA 687 14.29 a.7.15.1,d.322.1.2,d.136.1.4,d.136.1.4 121896,121897,121898,121899 2uzxB 727 15.53 2qqjA 325 21.66 1a88A 275 23.58 c.69.1.12 34707 1z90A 469 23.59 b.81.1.4,c.68.1.5 124732,124733 1jvsA 400 24.39 a.69.3.1,c.2.1.3,d.81.1.3 77187,77188,77189 1j8mF 297 25.63 a.24.13.1,c.37.1.10 62742,62743 1i6wA 181 26.05 c.69.1.18 61859 1kzkA 99 27.36 b.50.1.1 73371 1rroA 108 27.85 a.39.1.4 17195 2hxvA 360 28.93 c.71.1.2,c.97.1.2 136859,136860 2egvA 229 29.89 1nh0A 99 29.95 b.50.1.1 91869 2hs1A 99 31.15 2fxdA 99 31.40 1ni4A 365 32.09 c.36.1.11 85728 2p1jA 186 32.26 1nziA 159 34.39 b.23.1.1,g.3.11.1 86449,86450 2rd7A 367 35.36 2ouiA 360 35.42 1xbfA 140 35.43 d.273.1.1 109538 1pvlA 301 35.67 f.6.1.1 43819 3bsoA 510 36.18 2v3vA 723 39.44 2afwA 329 40.14 c.56.5.8 126707 1euwA 152 40.30 b.85.4.1 28349 2vngA 180 42.04 1n25A 368 42.47 c.37.1.20 85264 2rjoA 332 43.38 3ci0K 298 43.63 2qa1A 500 44.29 1hs6A 611 44.48 a.118.1.7,b.98.1.1,d.92.1.13 61233,61234,61235 2o56A 407 45.70 2qvwA 756 45.93 3bwxA 285 45.96 1ispA 181 47.00 c.69.1.18 76778 1yobA 179 47.79 c.23.5.1 123776 1xwtA 405 50.87 a.102.1.2 122410 2yysA 286 52.25 1jk3A 158 53.01 d.92.1.11 66790 1z2aA 168 54.32 c.37.1.8 124374 1ii2A 524 55.73 c.91.1.1,c.109.1.1 66146,66147 1m40A 263 56.58 e.3.1.1 74437 1miuA 738 56.81 a.170.1.1,a.171.1.1,b.40.4.3,b.40.4.3,b.40.4.3 79153,79154,79155,79156,79157 2h4aA 325 56.84 1fl0A 171 57.10 b.40.4.4 25315 2i62A 265 57.72 2z43A 324 58.08 1xw2A 405 58.88 a.102.1.2 122389 2a15A 139 61.50 d.17.4.3 125973 1zk5A 176 61.61 2r76A 152 63.43 1whoA 96 64.38 b.7.3.1 23215 2bogX 286 64.42 1m7xA 617 64.43 b.1.18.2,b.71.1.1,c.1.8.1 78749,78750,78751 2bdeA 470 64.51 c.108.1.23 128335 2hc0A 99 66.37 2dx0A 138 66.80 1ydyA 356 68.40 c.1.18.3 123006 1d0cA 444 68.48 d.174.1.1 64769 1k8kC 372 69.83 b.69.4.1 68308 2r11A 306 70.72 2fncA 381 72.44 1ve0A 134 73.61 1ia6A 441 73.80 a.102.1.2 76738 1z4hA 66 73.81 2bo9A 308 73.83 c.56.5.1 128897 2gj2A 85 77.39 1eu8A 409 78.08 c.94.1.1 59502 2z3hA 130 79.99 1xqwA 293 81.78 2uvjA 408 84.77 1tvfA 369 86.26 b.105.1.2,e.3.1.1 107358,107359 2a97A 439 87.87 3tmkA 216 88.21 c.37.1.1 31920 1luzA 88 88.97 b.40.4.5 74271 2ffeA 311 89.61 c.143.1.1 133381