# List of top-scoring protein chains for t04-w0.5-1-n_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1a6f	119	9.686		
1uc7A	125	11.23	c.47.1.1	99163
1dazC	99	12.44	b.50.1.1	26501
1z2aA	168	24.99	c.37.1.8	124374
3c9pA	123	25.67		
2fxdA	99	28.35		
2hs1A	99	29.11		
1kzkA	99	33.39	b.50.1.1	73371
1nh0A	99	34.44	b.50.1.1	91869
1vplA	256	40.47	c.37.1.12	113966
2h00A	254	40.66	c.66.1.54	135925
1z4hA	66	43.48		
1khyA	148	45.29	a.174.1.1	77410
2jdiA	510	50.24		
1kb9I	55	54.33	f.23.14.1	77324
1tvjA	166	57.76		
2yysA	286	59.45		
1ispA	181	63.20	c.69.1.18	76778
2r76A	152	63.40		
1v1aA	309	64.16	c.72.1.1	100249
2fncA	381	66.53		
1h6oA	204	74.25	a.146.1.1	60689
2fkkA	206	78.46		
1c9oA	66	78.63	b.40.4.5	25325
1kjwA	295	79.08	b.34.2.1,c.37.1.1	68643,68644
3b7nA	320	82.07		
2uzxB	727	84.34		
1y0pA	571	86.14	a.138.1.3,c.3.1.4,d.168.1.1	122507,122508,122509
2hc0A	99	86.75		
1ni5A	433	88.22	b.153.1.2,d.229.1.1,c.26.2.5	111592,111593,80533
2c82A	413	88.38		
1te5A	257	89.39	d.153.1.1	106795
1l0bA	229	89.60	c.15.1.3,c.15.1.3	73391,73392
1sz2A	332	89.89	c.55.1.7	112169