# List of top-scoring protein chains for t04-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1a6f	119	10.95		
1vplA	256	14.42	c.37.1.12	113966
1oivA	191	17.46	c.37.1.8	93076
2fkkA	206	18.03		
1ispA	181	18.79	c.69.1.18	76778
1dazC	99	19.33	b.50.1.1	26501
1uc7A	125	19.91	c.47.1.1	99163
3c9pA	123	29.23		
2hs1A	99	31.38		
1z2aA	168	39.42	c.37.1.8	124374
2h00A	254	39.74	c.66.1.54	135925
1t3kA	152	42.34	c.46.1.1	106357
1i2mA	216	43.11	c.37.1.8	61568
1nh0A	99	43.36	b.50.1.1	91869
1z4hA	66	43.92		
1khyA	148	45.35	a.174.1.1	77410
1kmqA	184	47.61	c.37.1.8	84412
2fxdA	99	50.31		
1r2qA	170	56.08	c.37.1.8	96874
1zyiA	171	61.73		
1huqA	164	62.32	c.37.1.8	32020
1kzkA	99	66.54	b.50.1.1	73371
1m9zA	111	66.91	g.7.1.3	78881
1ek0A	170	69.28	c.37.1.8	32076
2qjtA	352	69.82		
1jy2P	48	70.64	h.1.8.1	67442
1puiA	210	79.80	c.37.1.8	88292
2ahrA	259	82.64	a.100.1.10,c.2.1.6	126775,126776
2qizA	982	83.07		
1z08A	170	83.31	c.37.1.8	124303
2i15A	135	86.69		
1tvmA	113	87.73		
1u8zA	168	89.13	c.37.1.8	113212
1m7bA	184	89.34	c.37.1.8	74572