# List of top-scoring protein chains for t04-80-60-80-str2+near-backbone-11-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1uocA	289	5.933	c.55.3.9	99686
2hdoA	209	6.709	c.108.1.6	136345
1tuzA	118	7.161	a.39.1.7	112670
1vb3A	428	9.180	c.79.1.1	119942
1h72C	296	10.85	d.14.1.5,d.58.26.1	60712,60713
2dbhA	102	14.93		
1kpsB	171	15.99	a.118.12.1	68787
2grrB	170	17.59		
1q67A	231	21.62	b.55.1.7	95960
2c6yA	111	22.74	a.4.5.14	130011
119l	164	24.59		
1vplA	256	27.31	c.37.1.12	113966
2g7uA	257	28.97		
2z4uA	261	31.55		
1j9bA	141	32.37	c.47.1.12	66459
2o56A	407	33.21		
3cnhA	200	34.79		
1uxtA	501	37.16	c.82.1.1	108125
1qjcA	158	37.67	c.26.1.3	63328
1wu2A	396	38.37	b.85.6.1,b.103.1.1,c.57.1.2	114884,114885,114886
1s3cA	141	39.15		
2bdtA	189	39.77	c.37.1.25	128344
1lw9A	164	40.10	d.2.1.3	84727
1mrjA	247	41.37	d.165.1.1	42177
2zivB	351	42.04		
1i2aA	219	42.69	e.24.1.1	90660
1u61A	138	43.24	a.149.1.1	107696
1uuhA	159	46.24	d.169.1.4	100008
1od6A	160	46.25	c.26.1.3	86836
2eiyA	308	47.09		
1i9sA	210	47.23	c.45.1.1	62099
174lA	164	47.63	d.2.1.3	36956
1p36A	164	49.10	d.2.1.3	93978
1jkvA	266	49.12	a.25.1.3	71719
3c9gA	142	49.84		
2fvhA	120	50.74		
2hsbA	126	51.88		
2cb0A	333	52.15		
1se9A	126	52.16	d.15.1.1	98821
2f2cA	254	53.35	a.74.1.1,a.74.1.1	132805,132806
1r5tA	142	53.37	c.97.1.1	104812
1t7pA	698	54.79	c.55.3.5,e.8.1.1	33712,43005
7taa	478	54.92		
2vglB	591	55.26		
2pf5A	98	58.51		
175lA	164	60.41	d.2.1.3	36924
1rxdA	159	60.67	c.45.1.1	111959
3bu3A	306	61.01		
1to2E	281	61.13	c.41.1.1	112595
4ubpA	101	61.19	d.8.1.1	37352
2o7aA	124	61.58		
1munA	225	62.24	a.96.1.2	18744
2nswA	60	63.81		
1mrj	247	64.35		
1zckA	154	67.28		
1ezwA	349	67.47	c.1.16.3	29558
2ia2A	265	68.39		
1zybA	232	68.80	a.4.5.4,b.82.3.2	125815,125816
2a1rA	430	69.44		
2ntxA	365	71.13		
1r0rE	274	71.85	c.41.1.1	96735
2ox4A	403	73.27		
1yrkA	126	73.54		
2cn5A	329	74.14		
2ywvA	244	74.17		
2yysA	286	76.11		
2pgeA	377	76.37		
1szhA	161	76.66	a.226.1.1	106157
1dceB	331	78.93	a.102.4.3	18872
1f5qB	252	79.34	a.74.1.1,a.74.1.1	18362,18363
1ul7A	102	80.45	d.129.6.1	99540
1sx7A	164	80.79	d.2.1.3	112140
1m7kA	99	80.84	a.7.7.1	74573
1a7jA	290	82.03	c.37.1.6	31952
2od5A	116	82.85		
1gxqA	106	83.39	a.4.6.1	70721
2b49A	287	84.97		
1t0qA	498	85.45	a.25.1.2	106220
1fwkA	296	87.03	d.14.1.5,d.58.26.1	37576,39398
1egaA	301	89.05	c.37.1.8,d.52.3.1	32150,38836