# List of top-scoring protein chains for t2k-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2yxoA 267 2.81e-29 1m65A 245 2.81e-15 c.6.3.1 84847 2anuA 255 7.90e-06 c.6.3.1 127058 2hnhA 910 3.21e-05 1zzmA 259 0.4760 c.1.9.12 125911 2qulA 290 0.4794 1j6oA 268 0.5323 c.1.9.12 77088 2v5jA 287 0.7817 1yixA 265 2.929 c.1.9.12 123371 1k6wA 426 3.653 b.92.1.2,c.1.9.5 68236,68237 1a4mA 349 4.947 c.1.9.1 29014 2gzxA 265 6.588 1tv8A 340 8.298 c.1.28.3 107352 2yxbA 161 9.148 1q7zA 566 9.480 c.1.21.2,c.1.26.1 96090,96091 3cnyA 301 9.524 1xrsB 262 10.07 c.23.6.1,d.230.4.1 115884,115885 1ccwA 137 10.13 c.23.6.1 31238 1qumA 285 10.55 c.1.15.1 29393 2pgfA 371 10.62 2fb2A 340 11.03 1r30A 369 11.15 c.1.28.1 96895 1vflA 356 11.53 c.1.9.1 120041 2depA 356 12.21 1fkx 349 12.26 1kcxA 518 12.46 b.92.1.3,c.1.9.6 90953,90954 2i5gA 325 13.15 1v77A 212 13.92 c.6.3.2 108402 1be1 137 14.97 1rhcA 330 16.39 c.1.16.3 97468 2dr1A 386 16.51 1k77A 260 17.35 c.1.15.5 72096 1qtwA 285 17.87 c.1.15.1 29392 1ezwA 349 19.94 c.1.16.3 29558 2podA 410 20.51 1i60A 278 20.72 c.1.15.4 71118 1w1iE 357 21.38 c.1.9.1 109051 2nzlA 392 21.63 1j2rA 199 22.69 c.33.1.3 90788 1xwyA 264 23.67 c.1.9.12 122411 1ekxA 311 24.45 c.78.1.1,c.78.1.1 35088,35089 1qdbA 473 25.83 a.138.1.3 19688 2bp1A 360 27.06 5reqA 727 28.32 c.1.19.1,c.23.6.1 29632,31259 1zhaA 267 29.01 2o14A 375 29.51 1ad4A 266 29.71 c.1.21.1 29670 1eyeA 280 29.93 c.1.21.1 29672 1f60A 458 30.88 b.43.3.1,b.44.1.1,c.37.1.8 25705,25745,32140 1m5wA 243 31.12 c.1.24.1 84836 1tx2A 297 32.33 c.1.21.1 107420 2b81A 323 33.62 1d0vA 356 34.58 c.39.1.1 32476 1aj2 282 34.76 3c8nA 356 35.01 1tif 78 35.18 1aj2A 282 36.10 c.1.21.1 29665 2vhlA 396 37.28 1d3gA 367 38.97 c.1.4.1 28600 2hk0A 309 39.68 1exbA 332 40.01 c.1.7.1 28666 1hw6A 278 40.91 c.1.7.1 61296 1v2dA 381 41.75 c.67.1.1 108281 1ebdA 455 42.02 c.3.1.5,c.3.1.5,d.87.1.1 30577,30578,40210 2pp3A 398 42.51 1s1pA 331 43.15 c.1.7.1 98350 2amxA 376 43.22 c.1.9.1 127024 1vjoA 393 45.48 c.67.1.3 100827 1yxyA 234 45.67 c.1.2.5 124203 1ii7A 333 45.70 d.159.1.4 62415 1reqA 727 46.30 c.1.19.1,c.23.6.1 29620,31247 1lroA 267 46.67 c.1.10.4 78161 1acmA 310 47.22 c.78.1.1,c.78.1.1 35180,35181 1o94A 729 47.91 c.1.4.1,c.3.1.1,c.4.1.1 81200,81201,81202 1qwtA 255 48.53 b.26.1.3 96501 1zkpA 268 48.54 d.157.1.9 125205 1vr6A 350 50.56 c.1.10.4 120439 1bmtA 246 51.66 a.46.1.1,c.23.6.1 17757,31235 1byuA 216 51.88 c.37.1.8 32032 1rk6A 496 52.35 b.92.1.6,b.92.1.6,c.1.9.11 97599,97600,97601 1goxA 369 53.65 c.1.4.1 28607 1wohA 305 54.00 c.42.1.1 109446 8atcA 310 54.91 c.78.1.1,c.78.1.1 35132,35133 2dr3A 247 55.02 1f07A 321 56.05 c.1.16.3 59560 1d8wA 426 56.72 c.1.15.2 29394 1ceo 343 57.17 2ragA 417 58.10 2csgA 424 58.55 b.82.2.12 130768 2i7gA 376 58.82 1tqjA 230 59.58 c.1.2.2 107228 2abbA 364 59.94 c.1.4.1 126517 1qrqA 325 60.41 c.1.7.1 28667 1m7xA 617 61.05 b.1.18.2,b.71.1.1,c.1.8.1 78749,78750,78751 1eceA 358 61.13 c.1.8.3 28813 2q8xA 331 63.19 1rpxA 230 63.43 c.1.2.2 28536 1v0lA 313 64.10 c.1.8.3 108207 1fh9A 312 65.49 c.1.8.3 28913 1rvkA 382 65.58 c.1.11.2,d.54.1.1 97928,97929 1qg4A 216 65.74 c.37.1.8 32035 1zjaA 557 66.40 2fliA 220 67.43 c.1.2.2 133714 2obiA 183 67.76 1d1qA 161 69.03 c.44.1.1 32642 1ituA 369 69.14 c.1.9.7 71423 3ccgA 190 70.79 2p0oA 372 70.85 1gqnA 252 70.89 c.1.10.1 90514 1zgdA 312 72.72 1ho1A 242 73.25 c.1.24.1 61097 2qw5A 335 73.71 1wu7A 434 75.28 c.51.1.1,d.104.1.1 121275,121276 2du2A 374 75.44 1gveA 327 75.69 c.1.7.1 70597 1tkkA 366 75.96 c.1.11.2,d.54.1.1 107089,107090 1y44A 320 76.04 d.157.1.7 122608 1uumA 372 76.17 c.1.4.1 100010 1h5vA 304 76.27 c.1.8.3 70898 1tifA 78 78.20 d.15.8.1 37836 1y80A 210 78.58 1kl1A 419 79.38 c.67.1.4 72663 1rvgA 305 80.57 c.1.10.2 97920 1xfkA 336 80.81 c.42.1.1 115264 2rduA 387 82.23 1wr8A 231 82.99 c.108.1.10 114836 1tksA 204 83.04 d.115.1.2 107114 2z00A 426 83.73 1i7qB 193 85.82 c.23.16.1 61902 2e7yA 280 85.90 2og9A 393 86.25 2yxzA 311 86.29 2h09A 155 86.49 1vd6A 224 87.03 c.1.18.3 119991 2pozA 392 87.43 2tmdA 729 89.10 c.1.4.1,c.3.1.1,c.4.1.1 28616,30317,30602