# List of top-scoring protein chains for t2k-w0.5-1-str4-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2qpwA	149	1.51e-26		
2o8jA	281	4.70e-10		
2igqA	285	1.28e-09		
2rfiA	285	1.12e-08		
1n6aA	259	1.17e-08	b.76.2.1,b.85.7.1	80121,80122
1zkkA	167	1.23e-08		
3bo5A	290	3.61e-08		
2f69A	261	1.85e-07	b.76.2.1,b.85.7.1	133035,133036
1ml9A	302	5.93e-07	b.85.7.1	79282
1n3jA	119	4.04e-06	b.85.7.2	79963
2ag9A	164	4.222		
1btnA	106	5.246	b.55.1.1	26952
1t92A	116	6.075	d.24.1.3	112326
1btn	106	9.103		
1p0yA	444	10.06	a.166.1.1,b.85.7.3	87654,87655
2dtcA	126	11.63		
2h21A	440	14.45	a.166.1.1,b.85.7.3	135976,135977
1btkA	169	17.32	b.55.1.1	26959
1qdlB	195	20.05	c.23.16.1	31437
2geyA	158	22.13		
1qqgA	264	23.51	b.55.1.2,b.55.1.2	26987,26988
2agcA	162	23.65		
2dynA	122	27.54	b.55.1.1	26957
2p0dA	129	28.24		
2dreA	180	29.56		
1mrj	247	30.01		
1c3oB	382	30.79	c.8.3.1,c.23.16.1	30744,31421
1cs0B	382	32.04	c.8.3.1,c.23.16.1	30740,31417
2b7uA	257	32.86		
1lk2B	99	34.46	b.1.1.2	91058
1i1qB	192	34.51	c.23.16.1	61544
1c30B	382	37.57	c.8.3.1,c.23.16.1	30736,31413
1skoB	130	37.98	d.110.7.1	105677
1wl8A	189	39.81	c.23.16.1	120997
1vetB	125	40.37	d.110.7.1	108554
1feuA	206	46.08	b.53.1.1	59801
1wc3A	219	49.11	d.58.29.1	114495
1inp	400	50.61		
2icgA	160	50.81		
1o7fA	469	51.17	a.4.5.31,b.82.3.2,b.82.3.2	81131,81132,81133
1vllA	334	51.58	c.2.1.13	108834
1kjvB	100	52.61	b.1.1.2	77423
1kjkA	64	54.64	d.10.1.4	72613
1l6xA	207	55.34	b.1.1.2,b.1.1.2	73642,73643
1lqtA	456	57.55	c.3.1.1,c.4.1.1	74198,74199
2b4uA	335	57.83		
1rfeA	162	59.53	b.45.1.1	111796
2j3xA	431	59.91		
1upqA	123	60.55	b.55.1.1	113392
1faoA	126	61.02	b.55.1.1	26974
2aobA	99	61.80	d.93.1.1	127076
3bk5A	237	62.71		
1zm0A	114	62.89	b.55.1.1	125276
1omoA	322	63.70	c.2.1.13	104017
1wgvA	124	66.84	b.15.1.4	114624
2ohcA	289	67.20		
1dbhA	354	67.61	a.87.1.1,b.55.1.1	18514,26967
1v04A	355	69.25	b.68.6.2	100240
1zo4A	473	69.78		
1nxmA	197	71.83	b.82.1.1	86385
1pls	113	74.74		
1gydB	315	77.59	b.67.2.1	70751
1zoyB	252	80.31		
1h3nA	878	81.11	a.27.1.1,b.51.1.1,c.26.1.1	76641,76642,76643
1l9xA	315	84.96	c.23.16.1	73762
1tulA	108	87.10	b.85.5.1	28373
3bb6A	127	87.19		
1ti6A	875	87.22	b.52.2.2,c.81.1.1	106974,106975
3bjvA	161	88.03