# List of top-scoring protein chains for t2k-w0.5-1-str2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2qpwA	149	2.89e-27		
2o8jA	281	3.36e-10		
2igqA	285	7.87e-10		
2rfiA	285	6.38e-09		
1zkkA	167	7.32e-09		
1n6aA	259	1.09e-08	b.76.2.1,b.85.7.1	80121,80122
3bo5A	290	2.98e-08		
2f69A	261	2.74e-07	b.76.2.1,b.85.7.1	133035,133036
1ml9A	302	8.69e-07	b.85.7.1	79282
1n3jA	119	5.42e-06	b.85.7.2	79963
2ag9A	164	2.719		
1t92A	116	3.522	d.24.1.3	112326
1btnA	106	6.933	b.55.1.1	26952
2h21A	440	7.186	a.166.1.1,b.85.7.3	135976,135977
1p0yA	444	10.22	a.166.1.1,b.85.7.3	87654,87655
2dtcA	126	11.98		
1btn	106	13.98		
1qdlB	195	15.69	c.23.16.1	31437
1pls	113	17.95		
1qqgA	264	18.16	b.55.1.2,b.55.1.2	26987,26988
1btkA	169	20.42	b.55.1.1	26959
1c30B	382	21.37	c.8.3.1,c.23.16.1	30736,31413
2agcA	162	22.02		
2p0dA	129	22.78		
1lqtA	456	25.01	c.3.1.1,c.4.1.1	74198,74199
2geyA	158	26.03		
1c3oB	382	27.91	c.8.3.1,c.23.16.1	30744,31421
1wl8A	189	30.52	c.23.16.1	120997
2dynA	122	30.77	b.55.1.1	26957
1inp	400	30.98		
1omoA	322	31.90	c.2.1.13	104017
1feuA	206	32.86	b.53.1.1	59801
1o7fA	469	35.45	a.4.5.31,b.82.3.2,b.82.3.2	81131,81132,81133
1gydB	315	35.67	b.67.2.1	70751
1lk2B	99	36.47	b.1.1.2	91058
2ohcA	289	36.82		
1vllA	334	39.62	c.2.1.13	108834
1wc3A	219	40.50	d.58.29.1	114495
2b7uA	257	42.36		
1dbhA	354	47.28	a.87.1.1,b.55.1.1	18514,26967
2j3xA	431	47.99		
1faoA	126	49.26	b.55.1.1	26974
2bghA	421	49.48		
1i1qB	192	50.14	c.23.16.1	61544
1cs0B	382	54.18	c.8.3.1,c.23.16.1	30740,31417
2b4uA	335	56.42		
2ag4A	164	58.80	b.95.1.1	126717
2icgA	160	60.56		
1tulA	108	63.73	b.85.5.1	28373
2acoA	173	65.19		
1be9A	119	66.65	b.36.1.1	24774
1uv4A	293	67.05	b.67.2.1	119705
2p24B	259	68.78		
1zm0A	114	69.27	b.55.1.1	125276
1kjvB	100	70.65	b.1.1.2	77423
1e2wA	251	71.70	b.2.6.1,b.84.2.2	22466,28252
1l6xA	207	72.65	b.1.1.2,b.1.1.2	73642,73643
1pbiA	72	74.10	g.3.13.1	44346
1ci3M	249	75.22	b.2.6.1,b.84.2.2	22480,28266
1v04A	355	80.79	b.68.6.2	100240
1giqA	413	81.10	d.166.1.1,d.166.1.1	76224,76225
1hcz	252	81.47		
1kjkA	64	83.31	d.10.1.4	72613
1gnuA	117	83.34	d.15.1.3	65403
2aobA	99	83.77	d.93.1.1	127076
1kz7A	353	87.49	a.87.1.1,b.55.1.1	73333,73334