# List of top-scoring protein chains for t2k-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2qpwA 149 3.15e-27 2o8jA 281 1.01e-10 2igqA 285 1.69e-10 2rfiA 285 3.11e-09 1zkkA 167 4.91e-09 1n6aA 259 1.42e-08 b.76.2.1,b.85.7.1 80121,80122 3bo5A 290 1.64e-08 1ml9A 302 1.56e-07 b.85.7.1 79282 2f69A 261 3.52e-07 b.76.2.1,b.85.7.1 133035,133036 1n3jA 119 6.04e-06 b.85.7.2 79963 1t92A 116 0.9603 d.24.1.3 112326 2h21A 440 1.786 a.166.1.1,b.85.7.3 135976,135977 1btnA 106 1.951 b.55.1.1 26952 1p0yA 444 2.892 a.166.1.1,b.85.7.3 87654,87655 1btn 106 3.233 2p0dA 129 3.736 2ag9A 164 4.367 1pls 113 4.817 2v0hA 456 5.987 1mrj 247 7.498 1fxjA 331 9.560 b.81.1.4,c.68.1.5 28062,34520 1e2wA 251 9.618 b.2.6.1,b.84.2.2 22466,28252 1ci3M 249 10.51 b.2.6.1,b.84.2.2 22480,28266 2nzhA 113 10.89 1yfuA 174 11.76 b.82.1.20 123094 1hcz 252 11.95 2dtcA 126 12.12 1c30B 382 12.28 c.8.3.1,c.23.16.1 30736,31413 2geyA 158 12.70 1lqtA 456 14.39 c.3.1.1,c.4.1.1 74198,74199 1dbhA 354 15.03 a.87.1.1,b.55.1.1 18514,26967 1fwyA 331 17.39 b.81.1.4,c.68.1.5 28064,34522 1qexA 288 19.80 b.32.1.1 24425 1kz7A 353 21.52 a.87.1.1,b.55.1.1 73333,73334 1rfeA 162 21.89 b.45.1.1 111796 1ti6A 875 23.35 b.52.2.2,c.81.1.1 106974,106975 1qqgA 264 29.92 b.55.1.2,b.55.1.2 26987,26988 1jvnA 555 34.69 c.1.2.1,c.23.16.1 67355,67356 2aobA 99 35.37 d.93.1.1 127076 1o7fA 469 37.04 a.4.5.31,b.82.3.2,b.82.3.2 81131,81132,81133 2cavA 445 37.35 b.82.1.2,b.82.1.2 28094,28095 2acoA 173 37.69 3bb6A 127 39.43 1wl8A 189 39.91 c.23.16.1 120997 3bk5A 237 41.42 1v7rA 186 42.73 c.51.4.1 100482 2j3xA 431 43.05 1zm0A 114 43.20 b.55.1.1 125276 2gc9A 179 43.20 b.60.1.6 134972 2ci9A 102 43.24 1vetB 125 43.48 d.110.7.1 108554 3tdt 274 43.54 1y9lA 115 45.16 1feuA 206 46.89 b.53.1.1 59801 1u5fA 148 47.51 b.55.1.1 119542 1skoB 130 47.77 d.110.7.1 105677 1eo6A 117 49.47 d.15.1.3 37609 1ki1B 352 51.39 a.87.1.1,b.55.1.1 72497,72498 1mrjA 247 51.80 d.165.1.1 42177 2arcA 164 51.83 b.82.4.1 28148 1b25A 619 52.67 a.110.1.1,d.152.1.1 19044,41796 1ie7C 570 52.87 b.92.1.1,c.1.9.2 62315,62316 1gnuA 117 56.40 d.15.1.3 65403 2ciaA 102 56.45 1upqA 123 56.46 b.55.1.1 113392 2bghA 421 57.69 1kjkA 64 57.76 d.10.1.4 72613 2ohcA 289 58.31 1c3oB 382 59.58 c.8.3.1,c.23.16.1 30744,31421 2i5fA 109 60.14 1e96B 203 61.30 a.118.8.1 19211 1mq7A 154 61.52 b.85.4.1 79404 1ym5A 300 62.30 1bb9A 115 63.70 b.34.2.1 24554 2iu8A 374 64.21 2z0qA 346 66.42 1jmmA 377 70.39 b.30.6.1 71749 1x9gA 200 71.11 c.33.1.3 109527 1twfK 120 73.43 d.74.3.2 112736 1be9A 119 73.68 b.36.1.1 24774 2d93A 134 73.96 2h9fA 396 74.53 1l6xA 207 74.65 b.1.1.2,b.1.1.2 73642,73643 1wgvA 124 77.74 b.15.1.4 114624 2ag4A 164 78.92 b.95.1.1 126717 1kotA 119 79.55 d.15.1.3 68732 1cqqA 180 79.77 b.47.1.4 26422 1d5yA 292 79.88 a.4.1.8,a.4.1.8,d.60.1.2 16055,16056,39532 1vjuA 309 83.54 d.248.1.1 100835 2q2iA 116 84.41 1k30A 368 86.58 c.112.1.1 68067 1im8A 244 87.09 c.66.1.14 66212 1vs0A 310 89.56