# List of top-scoring protein chains for t2k-w0.5-1-o_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2qpwA	149	5.76e-28		
2igqA	285	7.07e-10		
2o8jA	281	7.40e-10		
2rfiA	285	1.16e-08		
1zkkA	167	2.01e-08		
1n6aA	259	3.38e-08	b.76.2.1,b.85.7.1	80121,80122
3bo5A	290	7.16e-08		
2f69A	261	5.55e-07	b.76.2.1,b.85.7.1	133035,133036
1ml9A	302	1.04e-06	b.85.7.1	79282
1n3jA	119	3.21e-06	b.85.7.2	79963
1btnA	106	2.391	b.55.1.1	26952
1t92A	116	3.509	d.24.1.3	112326
1btn	106	3.967		
2ag9A	164	7.973		
2dtcA	126	9.383		
2h21A	440	9.514	a.166.1.1,b.85.7.3	135976,135977
1p0yA	444	12.37	a.166.1.1,b.85.7.3	87654,87655
2p0dA	129	17.43		
2b7uA	257	19.88		
1btkA	169	19.90	b.55.1.1	26959
1lqtA	456	21.09	c.3.1.1,c.4.1.1	74198,74199
1c30B	382	24.10	c.8.3.1,c.23.16.1	30736,31413
1qdlB	195	28.14	c.23.16.1	31437
2ohcA	289	29.58		
2geyA	158	31.60		
2aobA	99	35.26	d.93.1.1	127076
1qqgA	264	36.45	b.55.1.2,b.55.1.2	26987,26988
2dynA	122	38.15	b.55.1.1	26957
1pls	113	38.60		
2agcA	162	40.79		
1v7rA	186	44.40	c.51.4.1	100482
1c3oB	382	44.82	c.8.3.1,c.23.16.1	30744,31421
1u5fA	148	45.18	b.55.1.1	119542
1skoB	130	46.04	d.110.7.1	105677
1wl8A	189	46.36	c.23.16.1	120997
1upqA	123	47.20	b.55.1.1	113392
2yvvA	338	48.63		
1zm0A	114	50.31	b.55.1.1	125276
1lk2B	99	51.46	b.1.1.2	91058
1vetB	125	51.84	d.110.7.1	108554
1mrj	247	52.45		
2nxnB	147	54.47		
1gydB	315	55.47	b.67.2.1	70751
1cs0B	382	55.62	c.8.3.1,c.23.16.1	30740,31417
1inp	400	56.64		
1kjvB	100	56.69	b.1.1.2	77423
3bk5A	237	61.62		
2gc9A	179	62.16	b.60.1.6	134972
1gyfA	62	62.21	d.76.1.1	39749
2ci9A	102	62.67		
1dbhA	354	65.74	a.87.1.1,b.55.1.1	18514,26967
1rfeA	162	65.85	b.45.1.1	111796
1pbiA	72	65.99	g.3.13.1	44346
2j59M	168	71.51		
1faoA	126	73.10	b.55.1.1	26974
1ig0A	319	74.73	b.82.6.1,c.100.1.1	62354,62355
487dL	133	75.01	i.1.1.2	45839
2b4uA	335	76.78		
1v04A	355	77.04	b.68.6.2	100240
2jqoA	108	79.40		
2dreA	180	80.71		
1fxjA	331	82.72	b.81.1.4,c.68.1.5	28062,34520
1l6xA	207	84.93	b.1.1.2,b.1.1.2	73642,73643
3bjvA	161	89.31