# List of top-scoring protein chains for t2k-w0.5-1-o_notor2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2qpwA	149	2.06e-28		
2o8jA	281	3.40e-10		
2igqA	285	4.53e-10		
2rfiA	285	8.07e-09		
1zkkA	167	1.61e-08		
1n6aA	259	1.93e-08	b.76.2.1,b.85.7.1	80121,80122
3bo5A	290	3.88e-08		
2f69A	261	3.36e-07	b.76.2.1,b.85.7.1	133035,133036
1ml9A	302	8.65e-07	b.85.7.1	79282
1n3jA	119	2.82e-06	b.85.7.2	79963
1t92A	116	2.843	d.24.1.3	112326
1btnA	106	4.499	b.55.1.1	26952
2h21A	440	7.920	a.166.1.1,b.85.7.3	135976,135977
1btn	106	8.756		
2ag9A	164	9.572		
1p0yA	444	9.908	a.166.1.1,b.85.7.3	87654,87655
1lqtA	456	15.47	c.3.1.1,c.4.1.1	74198,74199
2dtcA	126	18.73		
2p0dA	129	24.01		
1c30B	382	27.32	c.8.3.1,c.23.16.1	30736,31413
2geyA	158	29.19		
1qdlB	195	30.32	c.23.16.1	31437
2b7uA	257	30.40		
1v7rA	186	34.38	c.51.4.1	100482
1btkA	169	36.43	b.55.1.1	26959
1skoB	130	37.57	d.110.7.1	105677
2yvvA	338	38.66		
1c3oB	382	39.08	c.8.3.1,c.23.16.1	30744,31421
2dynA	122	39.84	b.55.1.1	26957
2gc9A	179	40.54	b.60.1.6	134972
2aobA	99	42.66	d.93.1.1	127076
1emsA	440	45.19	d.13.1.1,d.160.1.1	37520,42086
1wl8A	189	45.61	c.23.16.1	120997
1pbiA	72	46.04	g.3.13.1	44346
2agcA	162	46.87		
1vetB	125	48.73	d.110.7.1	108554
1inp	400	50.24		
1feuA	206	53.83	b.53.1.1	59801
1cs0B	382	55.28	c.8.3.1,c.23.16.1	30740,31417
1vllA	334	55.56	c.2.1.13	108834
2b4uA	335	61.63		
1qqgA	264	62.86	b.55.1.2,b.55.1.2	26987,26988
1ci3M	249	63.46	b.2.6.1,b.84.2.2	22480,28266
2jf7A	532	63.47		
1pls	113	66.79		
2nxnB	147	68.97		
2acoA	173	69.34		
1lk2B	99	70.34	b.1.1.2	91058
3bjvA	161	72.74		
2jqoA	108	73.28		
1l6xA	207	78.28	b.1.1.2,b.1.1.2	73642,73643
1v04A	355	78.95	b.68.6.2	100240
1gydB	315	79.20	b.67.2.1	70751
1kjvB	100	79.57	b.1.1.2	77423
1ppjD	241	81.60	a.3.1.3,f.23.11.1	104258,104259
1e2wA	251	82.68	b.2.6.1,b.84.2.2	22466,28252
1h3nA	878	83.25	a.27.1.1,b.51.1.1,c.26.1.1	76641,76642,76643
1gyfA	62	86.91	d.76.1.1	39749
1hcz	252	87.56		
1k30A	368	87.87	c.112.1.1	68067
1ig0A	319	89.39	b.82.6.1,c.100.1.1	62354,62355