# List of top-scoring protein chains for t2k-w0.5-1-o_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2qpwA	149	1.66e-27		
2o8jA	281	4.36e-10		
2igqA	285	6.26e-10		
2rfiA	285	1.08e-08		
1zkkA	167	1.79e-08		
1n6aA	259	3.17e-08	b.76.2.1,b.85.7.1	80121,80122
3bo5A	290	5.39e-08		
2f69A	261	4.49e-07	b.76.2.1,b.85.7.1	133035,133036
1ml9A	302	8.65e-07	b.85.7.1	79282
1n3jA	119	4.93e-06	b.85.7.2	79963
1btnA	106	3.293	b.55.1.1	26952
1t92A	116	3.433	d.24.1.3	112326
1btn	106	6.126		
2dtcA	126	9.213		
2ag9A	164	11.13		
2h21A	440	13.07	a.166.1.1,b.85.7.3	135976,135977
1p0yA	444	14.86	a.166.1.1,b.85.7.3	87654,87655
1btkA	169	19.67	b.55.1.1	26959
2p0dA	129	20.48		
2aobA	99	28.84	d.93.1.1	127076
2b7uA	257	29.55		
1qdlB	195	31.60	c.23.16.1	31437
1c30B	382	31.91	c.8.3.1,c.23.16.1	30736,31413
1lqtA	456	32.20	c.3.1.1,c.4.1.1	74198,74199
2geyA	158	35.97		
1skoB	130	36.52	d.110.7.1	105677
1qqgA	264	38.25	b.55.1.2,b.55.1.2	26987,26988
1inp	400	39.09		
1v7rA	186	39.98	c.51.4.1	100482
2yvvA	338	45.90		
1vetB	125	48.79	d.110.7.1	108554
1wl8A	189	49.10	c.23.16.1	120997
1c3oB	382	49.58	c.8.3.1,c.23.16.1	30744,31421
2dynA	122	51.58	b.55.1.1	26957
2agcA	162	52.38		
1pls	113	54.22		
1cs0B	382	57.77	c.8.3.1,c.23.16.1	30740,31417
1pbiA	72	61.88	g.3.13.1	44346
1ig0A	319	62.61	b.82.6.1,c.100.1.1	62354,62355
2b4uA	335	62.95		
2nxnB	147	64.77		
3bjvA	161	64.88		
2ohcA	289	68.58		
1vllA	334	69.31	c.2.1.13	108834
1gydB	315	70.31	b.67.2.1	70751
2gc9A	179	70.61	b.60.1.6	134972
1gyfA	62	71.07	d.76.1.1	39749
1u5fA	148	72.32	b.55.1.1	119542
487dL	133	76.12	i.1.1.2	45839
1o7fA	469	76.66	a.4.5.31,b.82.3.2,b.82.3.2	81131,81132,81133
1feuA	206	80.58	b.53.1.1	59801
1upqA	123	84.78	b.55.1.1	113392
2jf7A	532	87.30		
1v04A	355	87.46	b.68.6.2	100240
1k30A	368	88.64	c.112.1.1	68067
1lk2B	99	89.12	b.1.1.2	91058