# List of top-scoring protein chains for t2k-w0.5-1-near-backbone-11-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2qpwA	149	7.40e-26		
2igqA	285	2.82e-10		
2o8jA	281	4.09e-10		
2rfiA	285	4.16e-09		
1zkkA	167	2.39e-08		
3bo5A	290	4.05e-08		
1n6aA	259	1.09e-07	b.76.2.1,b.85.7.1	80121,80122
2f69A	261	5.58e-07	b.76.2.1,b.85.7.1	133035,133036
1ml9A	302	8.30e-07	b.85.7.1	79282
1n3jA	119	4.25e-06	b.85.7.2	79963
2ohcA	289	4.554		
2dtcA	126	6.179		
1btnA	106	8.034	b.55.1.1	26952
1btn	106	10.20		
1p0yA	444	12.40	a.166.1.1,b.85.7.3	87654,87655
2masA	314	14.40	c.70.1.1	34810
2h21A	440	18.50	a.166.1.1,b.85.7.3	135976,135977
1gnuA	117	18.52	d.15.1.3	65403
1qqgA	264	19.98	b.55.1.2,b.55.1.2	26987,26988
1dbhA	354	21.56	a.87.1.1,b.55.1.1	18514,26967
1skoB	130	27.02	d.110.7.1	105677
1eo6A	117	29.99	d.15.1.3	37609
1upqA	123	30.13	b.55.1.1	113392
1v7rA	186	30.57	c.51.4.1	100482
1btkA	169	32.06	b.55.1.1	26959
2ag9A	164	33.03		
1u5fA	148	34.54	b.55.1.1	119542
2p0dA	129	36.71		
1vetB	125	37.07	d.110.7.1	108554
1l9xA	315	39.33	c.23.16.1	73762
1t92A	116	39.89	d.24.1.3	112326
1faoA	126	55.54	b.55.1.1	26974
1qhaA	917	56.69	c.55.1.3,c.55.1.3,c.55.1.3,c.55.1.3	33467,33468,33469,33470
1wl8A	189	58.32	c.23.16.1	120997
2aobA	99	61.80	d.93.1.1	127076
1nxjA	183	69.56	c.8.7.1	86382
1eazA	125	70.44	b.55.1.1	70113
2dfkA	402	71.54		
1vavA	222	71.96	b.29.1.18	108472
1c30B	382	72.27	c.8.3.1,c.23.16.1	30736,31413
1b25A	619	73.77	a.110.1.1,d.152.1.1	19044,41796
1ki1B	352	74.59	a.87.1.1,b.55.1.1	72497,72498
1cs0B	382	75.35	c.8.3.1,c.23.16.1	30740,31417
1kotA	119	82.13	d.15.1.3	68732
2qfeA	148	82.42		
1pls	113	86.47		
2dreA	180	86.64		
2jqoA	108	88.63