# List of top-scoring protein chains for t2k-w0.5-1-n_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2qpwA	149	4.45e-30		
2o8jA	281	1.34e-10		
2igqA	285	2.24e-10		
2rfiA	285	2.65e-09		
1zkkA	167	5.35e-09		
1n6aA	259	9.63e-09	b.76.2.1,b.85.7.1	80121,80122
3bo5A	290	1.08e-08		
2f69A	261	2.44e-07	b.76.2.1,b.85.7.1	133035,133036
1ml9A	302	4.05e-07	b.85.7.1	79282
1n3jA	119	1.72e-06	b.85.7.2	79963
2ag9A	164	2.112		
1t92A	116	4.195	d.24.1.3	112326
1btnA	106	5.238	b.55.1.1	26952
2h21A	440	5.521	a.166.1.1,b.85.7.3	135976,135977
1btn	106	7.675		
1p0yA	444	11.01	a.166.1.1,b.85.7.3	87654,87655
2b7uA	257	11.49		
2p0dA	129	12.17		
1qqgA	264	13.06	b.55.1.2,b.55.1.2	26987,26988
2dynA	122	13.08	b.55.1.1	26957
1mrj	247	13.10		
2dtcA	126	13.60		
2geyA	158	15.37		
1skoB	130	16.98	d.110.7.1	105677
1c30B	382	17.75	c.8.3.1,c.23.16.1	30736,31413
1inp	400	19.35		
1vetB	125	19.88	d.110.7.1	108554
1btkA	169	20.62	b.55.1.1	26959
1lqtA	456	21.73	c.3.1.1,c.4.1.1	74198,74199
1c3oB	382	24.58	c.8.3.1,c.23.16.1	30744,31421
2agcA	162	27.40		
3bk5A	237	31.57		
1cs0B	382	34.24	c.8.3.1,c.23.16.1	30740,31417
1upqA	123	35.51	b.55.1.1	113392
2ag4A	164	36.59	b.95.1.1	126717
2qdlA	165	36.94		
1pls	113	43.66		
1o7fA	469	45.57	a.4.5.31,b.82.3.2,b.82.3.2	81131,81132,81133
1faoA	126	45.70	b.55.1.1	26974
1mrjA	247	46.20	d.165.1.1	42177
2ci9A	102	46.43		
1lk2B	99	49.12	b.1.1.2	91058
2p24B	259	51.47		
1wl8A	189	54.76	c.23.16.1	120997
1qdlB	195	55.06	c.23.16.1	31437
1kjvB	100	55.44	b.1.1.2	77423
1rfeA	162	60.61	b.45.1.1	111796
2gc9A	179	61.08	b.60.1.6	134972
1gydB	315	61.40	b.67.2.1	70751
2yvvA	338	62.96		
2j59M	168	64.40		
1v04A	355	65.28	b.68.6.2	100240
2jqoA	108	65.41		
1pbiA	72	72.99	g.3.13.1	44346
2aobA	99	73.14	d.93.1.1	127076
1fgyA	127	73.97	b.55.1.1	26976
2icgA	160	77.22		
2a6zA	222	77.49	b.29.1.13	126319
1dbhA	354	78.35	a.87.1.1,b.55.1.1	18514,26967
2nxnB	147	79.88		
1zm0A	114	81.31	b.55.1.1	125276
1v7rA	186	83.62	c.51.4.1	100482
1e2wA	251	83.72	b.2.6.1,b.84.2.2	22466,28252
1gnuA	117	84.29	d.15.1.3	65403
1l6xA	207	85.53	b.1.1.2,b.1.1.2	73642,73643
2dreA	180	85.99		
1wl7A	312	87.05	b.67.2.1	120996
1a9xB	379	89.33	c.8.3.1,c.23.16.1	30732,31409
2j3xA	431	89.97