# List of top-scoring protein chains for t2k-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2qpwA 149 7.74e-31 2o8jA 281 1.97e-11 3bo5A 290 1.66e-10 2igqA 285 3.08e-10 2rfiA 285 7.12e-10 1n6aA 259 6.04e-09 b.76.2.1,b.85.7.1 80121,80122 1zkkA 167 1.62e-08 1ml9A 302 2.74e-07 b.85.7.1 79282 2f69A 261 4.50e-07 b.76.2.1,b.85.7.1 133035,133036 1n3jA 119 6.69e-06 b.85.7.2 79963 1v04A 355 1.934 b.68.6.2 100240 2dtcA 126 3.190 1pjxA 314 3.847 b.68.6.1 104167 1n1tA 641 4.279 b.29.1.15,b.68.1.1 79821,79822 1nt0A 286 5.641 b.23.1.1,b.23.1.1,g.3.11.1 86143,86144,86145 2bf6A 449 7.542 1btnA 106 9.208 b.55.1.1 26952 1t92A 116 9.261 d.24.1.3 112326 1cxlA 686 9.98 b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21829,22498,27736,28723 1e3aB 560 10.00 2sliA 679 10.26 b.29.1.9,b.68.1.1 24274,27611 1emsA 440 11.25 d.13.1.1,d.160.1.1 37520,42086 1bdfA 235 11.38 d.74.3.1,d.181.1.1 39727,42602 1vavA 222 12.04 b.29.1.18 108472 2e63A 170 12.73 3cpnA 330 13.41 1mz5A 638 13.61 b.29.1.15,b.68.1.1 79679,79680 1btn 106 13.63 2pdrA 149 14.46 1jmcA 246 15.02 b.40.4.3,b.40.4.3 25300,25301 1y0yA 353 15.51 b.49.3.1,c.56.5.4 122514,122515 3cbwA 353 15.81 1ciyA 590 16.16 b.18.1.3,b.77.2.1,f.1.3.1 23720,27977,43392 1crkA 380 17.31 a.83.1.1,d.128.1.2 18458,41193 1itwA 741 19.26 c.77.1.2 76793 1goxA 369 19.57 c.1.4.1 28607 1l0qA 391 20.22 b.1.3.1,b.69.2.3 77644,77645 1oaoC 729 21.24 e.26.1.3 86746 2b4uA 335 22.24 1qbkB 890 22.63 a.118.1.1 19127 2uvfA 608 25.89 1xsjA 778 27.96 b.150.1.1,b.30.5.11,b.71.1.4,c.1.8.13 115951,115952,115953,115954 1cs0B 382 28.65 c.8.3.1,c.23.16.1 30740,31417 1tlyA 278 29.51 f.4.6.1 107143 1z6jT 211 29.62 b.1.2.1,b.1.2.1 124527,124528 1qdlB 195 31.09 c.23.16.1 31437 2pgnA 589 32.54 1mjgM 729 34.11 e.26.1.3 79204 2bbkH 355 34.63 b.69.2.1 27634 1inp 400 34.67 1vjpA 394 34.82 c.2.1.3,d.81.1.3 100828,100829 2hf0A 316 35.99 1btkA 169 36.08 b.55.1.1 26959 2hi2A 158 36.41 2dkhA 639 36.91 2zivA 311 36.94 1eywA 331 38.70 c.1.9.3 29057 2hhjA 267 38.75 c.60.1.1 136497 2d5lA 706 39.71 2qf7A 1165 40.09 1qfhA 212 43.19 b.1.18.10,b.1.18.10 21893,21894 1ekjA 221 45.05 c.53.2.1 33364 1zoyB 252 45.89 1ozhA 566 47.34 c.31.1.3,c.36.1.5,c.36.1.9 93833,93834,93835 1te5A 257 48.40 d.153.1.1 106795 1e4mM 501 49.92 c.1.8.4 59226 2hx0A 154 51.20 d.290.1.3 136830 2cc1A 262 52.78 e.3.1.1 130211 2q4zA 312 54.51 2z20A 432 55.50 1ut8A 291 56.57 a.60.7.1,c.120.1.2 99908,99909 2b7uA 257 57.46 1ef1A 294 58.90 a.11.2.1,b.55.1.5,d.15.1.4 16368,27003,37611 3c8wA 255 58.94 2dreA 180 60.13 1dgsA 667 60.65 a.60.2.2,b.40.4.6,d.142.2.2 17963,25365,41581 1m98A 317 60.68 a.175.1.1,d.17.4.6 78866,78867 1w5dA 462 60.89 e.3.1.3 120642 3b9jB 350 61.37 1hfeL 421 61.88 c.96.1.1,d.58.1.5 36018,39001 1wl8A 189 61.96 c.23.16.1 120997 3bjvA 161 63.35 1dbhA 354 63.52 a.87.1.1,b.55.1.1 18514,26967 3bqcA 335 64.09 2geyA 158 65.34 1x31C 206 66.45 1ci3M 249 69.37 b.2.6.1,b.84.2.2 22480,28266 1lk2B 99 69.67 b.1.1.2 91058 2polA 366 70.99 d.131.1.1,d.131.1.1,d.131.1.1 41356,41357,41358 1ms9A 648 72.83 b.29.1.15,b.68.1.1 85088,85089 1pbiA 72 73.04 g.3.13.1 44346 1h09A 338 73.10 b.109.1.1,c.1.8.8 83420,83421 1hcz 252 73.80 2h21A 440 74.41 a.166.1.1,b.85.7.3 135976,135977 2ajuH 219 74.45 1pytC 253 76.01 b.47.1.2 26233 2icgA 160 77.11 2p0dA 129 79.59 2g7bA 137 79.81 1n4wA 504 79.85 c.3.1.2,d.16.1.1 91676,91677 1vd3A 217 80.66 1w99A 558 81.05 3c9uA 342 81.05 1agjA 242 81.41 b.47.1.1 25827 1f0nA 285 83.73 c.69.1.3 34636 1qx4A 274 84.81 b.43.4.2,c.25.1.1 104624,104625 1yp1A 202 85.38 2f1vA 197 85.66 1k5nB 100 86.18 b.1.1.2 77268 1fwxA 595 86.88 b.6.1.4,b.69.3.1 60069,60070 1gw5S 142 87.67 d.110.4.2 70633 2odsA 265 88.71