# List of top-scoring protein chains for t2k-w0.5-1-n_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2qpwA	149	5.02e-29		
2o8jA	281	1.32e-10		
2igqA	285	2.15e-10		
2rfiA	285	2.99e-09		
1zkkA	167	6.98e-09		
1n6aA	259	6.99e-09	b.76.2.1,b.85.7.1	80121,80122
3bo5A	290	1.10e-08		
2f69A	261	1.55e-07	b.76.2.1,b.85.7.1	133035,133036
1ml9A	302	3.60e-07	b.85.7.1	79282
1n3jA	119	1.74e-06	b.85.7.2	79963
1btnA	106	3.055	b.55.1.1	26952
1t92A	116	3.615	d.24.1.3	112326
2dtcA	126	4.623		
1btn	106	4.728		
2ag9A	164	5.277		
2h21A	440	7.237	a.166.1.1,b.85.7.3	135976,135977
2p0dA	129	10.92		
1p0yA	444	14.54	a.166.1.1,b.85.7.3	87654,87655
1btkA	169	14.62	b.55.1.1	26959
1qqgA	264	15.22	b.55.1.2,b.55.1.2	26987,26988
1c30B	382	18.13	c.8.3.1,c.23.16.1	30736,31413
1c3oB	382	21.80	c.8.3.1,c.23.16.1	30744,31421
1inp	400	22.17		
2dynA	122	22.57	b.55.1.1	26957
1lqtA	456	23.93	c.3.1.1,c.4.1.1	74198,74199
2geyA	158	25.49		
2b7uA	257	27.75		
1cs0B	382	29.89	c.8.3.1,c.23.16.1	30740,31417
2agcA	162	31.50		
1skoB	130	32.17	d.110.7.1	105677
1o7fA	469	33.06	a.4.5.31,b.82.3.2,b.82.3.2	81131,81132,81133
1qdlB	195	39.51	c.23.16.1	31437
1lk2B	99	39.58	b.1.1.2	91058
1vetB	125	40.78	d.110.7.1	108554
1mrj	247	44.15		
1pls	113	45.18		
1v04A	355	45.88	b.68.6.2	100240
2j3xA	431	47.02		
1kjvB	100	51.63	b.1.1.2	77423
3bk5A	237	56.56		
1wl8A	189	57.14	c.23.16.1	120997
1vllA	334	60.50	c.2.1.13	108834
1gnuA	117	62.55	d.15.1.3	65403
1l6xA	207	67.13	b.1.1.2,b.1.1.2	73642,73643
2yvvA	338	68.54		
487dL	133	69.57	i.1.1.2	45839
1pbiA	72	69.67	g.3.13.1	44346
2nxnB	147	69.82		
1upqA	123	71.09	b.55.1.1	113392
2b4uA	335	71.52		
1dbhA	354	74.15	a.87.1.1,b.55.1.1	18514,26967
1faoA	126	76.69	b.55.1.1	26974
1a9xB	379	77.95	c.8.3.1,c.23.16.1	30732,31409
1zm0A	114	80.84	b.55.1.1	125276
1e2wA	251	82.29	b.2.6.1,b.84.2.2	22466,28252
1vjuA	309	82.94	d.248.1.1	100835
2dreA	180	83.45