# List of top-scoring protein chains for t2k-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2qpwA	149	2.13e-29		
2o8jA	281	8.13e-11		
2igqA	285	1.69e-10		
2rfiA	285	2.48e-09		
1zkkA	167	6.68e-09		
1n6aA	259	6.86e-09	b.76.2.1,b.85.7.1	80121,80122
3bo5A	290	1.35e-08		
2f69A	261	1.41e-07	b.76.2.1,b.85.7.1	133035,133036
1ml9A	302	3.16e-07	b.85.7.1	79282
1n3jA	119	1.35e-06	b.85.7.2	79963
1t92A	116	3.284	d.24.1.3	112326
2dtcA	126	4.576		
2ag9A	164	8.022		
1btnA	106	10.42	b.55.1.1	26952
2h21A	440	10.95	a.166.1.1,b.85.7.3	135976,135977
1inp	400	14.95		
1v7rA	186	17.26	c.51.4.1	100482
1p0yA	444	17.81	a.166.1.1,b.85.7.3	87654,87655
1btn	106	21.14		
1c30B	382	21.30	c.8.3.1,c.23.16.1	30736,31413
1pls	113	21.72		
1qqgA	264	26.02	b.55.1.2,b.55.1.2	26987,26988
2p0dA	129	30.05		
1lqtA	456	30.24	c.3.1.1,c.4.1.1	74198,74199
2yvvA	338	33.49		
1o7fA	469	34.75	a.4.5.31,b.82.3.2,b.82.3.2	81131,81132,81133
2ohcA	289	35.05		
1btkA	169	40.65	b.55.1.1	26959
2b7uA	257	42.08		
1qdlB	195	44.87	c.23.16.1	31437
1c3oB	382	48.04	c.8.3.1,c.23.16.1	30744,31421
2aobA	99	49.19	d.93.1.1	127076
1ym5A	300	49.73		
1v04A	355	51.12	b.68.6.2	100240
1fxjA	331	51.14	b.81.1.4,c.68.1.5	28062,34520
1pbiA	72	62.31	g.3.13.1	44346
2dynA	122	64.00	b.55.1.1	26957
1ie7C	570	66.06	b.92.1.1,c.1.9.2	62315,62316
1lk2B	99	69.27	b.1.1.2	91058
2dreA	180	73.37		
2v0hA	456	73.59		
2geyA	158	74.05		
2nxnB	147	74.15		
1ig0A	319	75.13	b.82.6.1,c.100.1.1	62354,62355
1emsA	440	75.75	d.13.1.1,d.160.1.1	37520,42086
2j3xA	431	78.13		
1l6xA	207	78.93	b.1.1.2,b.1.1.2	73642,73643
2acoA	173	81.86		
1wgvA	124	82.66	b.15.1.4	114624
1skoB	130	83.73	d.110.7.1	105677
1u5fA	148	84.73	b.55.1.1	119542
487dL	133	88.15	i.1.1.2	45839
3bjvA	161	88.65