# List of top-scoring protein chains for t2k-w0.5-1-bys-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2qpwA	149	7.25e-28		
2o8jA	281	1.88e-10		
2igqA	285	3.42e-10		
2rfiA	285	5.96e-09		
1n6aA	259	1.03e-08	b.76.2.1,b.85.7.1	80121,80122
1zkkA	167	2.39e-08		
3bo5A	290	4.29e-08		
2f69A	261	2.33e-07	b.76.2.1,b.85.7.1	133035,133036
1ml9A	302	3.02e-07	b.85.7.1	79282
1n3jA	119	4.89e-06	b.85.7.2	79963
2ag9A	164	2.245		
2dtcA	126	3.212		
1t92A	116	3.435	d.24.1.3	112326
1btnA	106	3.576	b.55.1.1	26952
2h21A	440	3.868	a.166.1.1,b.85.7.3	135976,135977
2p0dA	129	4.498		
1btn	106	6.128		
1p0yA	444	8.822	a.166.1.1,b.85.7.3	87654,87655
2v0hA	456	10.36		
1lqtA	456	14.19	c.3.1.1,c.4.1.1	74198,74199
1pls	113	14.63		
1fxjA	331	16.54	b.81.1.4,c.68.1.5	28062,34520
2agcA	162	18.77		
1qqgA	264	21.07	b.55.1.2,b.55.1.2	26987,26988
1c30B	382	26.19	c.8.3.1,c.23.16.1	30736,31413
2aobA	99	29.78	d.93.1.1	127076
1fwyA	331	30.30	b.81.1.4,c.68.1.5	28064,34522
1v7rA	186	33.01	c.51.4.1	100482
2ohcA	289	35.26		
1l6xA	207	37.57	b.1.1.2,b.1.1.2	73642,73643
2geyA	158	42.39		
1btkA	169	43.43	b.55.1.1	26959
1dbhA	354	43.54	a.87.1.1,b.55.1.1	18514,26967
2ag4A	164	43.88	b.95.1.1	126717
1u5fA	148	45.22	b.55.1.1	119542
1vhhA	162	46.18	d.65.1.2	39550
1ym5A	300	47.19		
2yvvA	338	51.23		
1skoB	130	51.99	d.110.7.1	105677
2acoA	173	54.83		
1cs0B	382	54.97	c.8.3.1,c.23.16.1	30740,31417
1zm0A	114	55.42	b.55.1.1	125276
1e2wA	251	55.65	b.2.6.1,b.84.2.2	22466,28252
1inp	400	57.04		
1vetB	125	59.79	d.110.7.1	108554
1emsA	440	62.96	d.13.1.1,d.160.1.1	37520,42086
1o7fA	469	63.02	a.4.5.31,b.82.3.2,b.82.3.2	81131,81132,81133
1hcz	252	68.19		
3tdt	274	68.88		
1c3oB	382	72.17	c.8.3.1,c.23.16.1	30744,31421
1ci3M	249	75.77	b.2.6.1,b.84.2.2	22480,28266
1mrj	247	76.32		
1gyfA	62	77.24	d.76.1.1	39749
1qdlB	195	79.67	c.23.16.1	31437
1wgvA	124	80.48	b.15.1.4	114624
1qexA	288	80.61	b.32.1.1	24425
1ti6A	875	81.54	b.52.2.2,c.81.1.1	106974,106975
1pbiA	72	81.58	g.3.13.1	44346
1wl8A	189	87.96	c.23.16.1	120997
1ig0A	319	89.56	b.82.6.1,c.100.1.1	62354,62355