# List of top-scoring protein chains for t2k-w0.5-1-alpha-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2qpwA	149	8.00e-30		
2o8jA	281	3.60e-11		
2igqA	285	4.70e-11		
2rfiA	285	9.77e-10		
1zkkA	167	2.84e-09		
1n6aA	259	3.73e-09	b.76.2.1,b.85.7.1	80121,80122
3bo5A	290	9.01e-09		
1ml9A	302	1.13e-07	b.85.7.1	79282
2f69A	261	1.36e-07	b.76.2.1,b.85.7.1	133035,133036
1n3jA	119	1.25e-06	b.85.7.2	79963
1t92A	116	1.621	d.24.1.3	112326
2ag9A	164	2.916		
2h21A	440	4.061	a.166.1.1,b.85.7.3	135976,135977
1btnA	106	6.253	b.55.1.1	26952
1p0yA	444	8.993	a.166.1.1,b.85.7.3	87654,87655
2dtcA	126	10.41		
1fxjA	331	11.57	b.81.1.4,c.68.1.5	28062,34520
1btn	106	11.61		
2p0dA	129	12.04		
2v0hA	456	17.36		
1lqtA	456	20.85	c.3.1.1,c.4.1.1	74198,74199
1c30B	382	21.21	c.8.3.1,c.23.16.1	30736,31413
2yvvA	338	24.05		
1v7rA	186	25.39	c.51.4.1	100482
1pls	113	26.72		
1fwyA	331	30.38	b.81.1.4,c.68.1.5	28064,34522
1o7fA	469	31.51	a.4.5.31,b.82.3.2,b.82.3.2	81131,81132,81133
1qqgA	264	33.60	b.55.1.2,b.55.1.2	26987,26988
2agcA	162	36.83		
2ag4A	164	44.06	b.95.1.1	126717
2b7uA	257	45.44		
1dbhA	354	49.55	a.87.1.1,b.55.1.1	18514,26967
1hcz	252	51.29		
1lk2B	99	51.73	b.1.1.2	91058
1feuA	206	53.16	b.53.1.1	59801
1ig0A	319	55.30	b.82.6.1,c.100.1.1	62354,62355
1ie7C	570	57.32	b.92.1.1,c.1.9.2	62315,62316
1c3oB	382	57.71	c.8.3.1,c.23.16.1	30744,31421
1vhhA	162	59.30	d.65.1.2	39550
1ci3M	249	61.02	b.2.6.1,b.84.2.2	22480,28266
2acoA	173	61.26		
1u5fA	148	64.78	b.55.1.1	119542
1e2wA	251	66.32	b.2.6.1,b.84.2.2	22466,28252
1i1qB	192	66.87	c.23.16.1	61544
2b4uA	335	67.24		
2ohcA	289	67.50		
1ym5A	300	68.14		
1l6xA	207	68.85	b.1.1.2,b.1.1.2	73642,73643
1wgvA	124	69.38	b.15.1.4	114624
1gnuA	117	69.55	d.15.1.3	65403
1ti6A	875	73.57	b.52.2.2,c.81.1.1	106974,106975
2geyA	158	73.72		
1inp	400	73.98		
1wl8A	189	74.80	c.23.16.1	120997
1ds9A	198	77.92	c.10.3.1	30879
1ahjA	207	79.64	d.149.1.1	41774
1skoB	130	80.82	d.110.7.1	105677
2aobA	99	82.91	d.93.1.1	127076
1k30A	368	83.29	c.112.1.1	68067
1cs0B	382	85.42	c.8.3.1,c.23.16.1	30740,31417
2dynA	122	86.11	b.55.1.1	26957
1pbiA	72	87.14	g.3.13.1	44346
1emsA	440	88.19	d.13.1.1,d.160.1.1	37520,42086
1d5yA	292	89.35	a.4.1.8,a.4.1.8,d.60.1.2	16055,16056,39532