# List of top-scoring protein chains for t2k-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2qpwA 149 7.82e-35 2igqA 285 2.73e-12 2o8jA 281 4.54e-12 1zkkA 167 2.42e-11 2rfiA 285 2.94e-11 1n6aA 259 1.73e-09 b.76.2.1,b.85.7.1 80121,80122 3bo5A 290 6.10e-09 1ml9A 302 2.17e-08 b.85.7.1 79282 2f69A 261 3.21e-08 b.76.2.1,b.85.7.1 133035,133036 1n3jA 119 1.21e-07 b.85.7.2 79963 2dtcA 126 0.8111 2p0dA 129 1.644 1pls 113 2.204 1qqgA 264 3.064 b.55.1.2,b.55.1.2 26987,26988 2d93A 134 3.320 2ohcA 289 4.107 2adzA 178 6.853 b.55.1.1 126599 1btnA 106 7.044 b.55.1.1 26952 2h21A 440 7.695 a.166.1.1,b.85.7.3 135976,135977 1bgyE 196 7.775 f.23.12.1 43683 1btn 106 9.546 1bx2B 191 9.619 b.1.1.2,d.19.1.1 21610,38184 1y96B 85 10.17 1btkA 169 10.73 b.55.1.1 26959 1u5fA 148 11.56 b.55.1.1 119542 2qdlA 165 12.61 1gnuA 117 13.17 d.15.1.3 65403 1eo6A 117 18.00 d.15.1.3 37609 1faoA 126 18.02 b.55.1.1 26974 1eazA 125 18.39 b.55.1.1 70113 1u7eB 154 18.72 1ki1B 352 19.19 a.87.1.1,b.55.1.1 72497,72498 1t92A 116 20.67 d.24.1.3 112326 2ch4W 151 20.88 b.40.7.1 130451 2masA 314 22.01 c.70.1.1 34810 1vctA 205 22.20 a.7.12.1,d.286.1.1 119986,119987 1hbnA 549 22.31 a.89.1.1,d.58.31.2 60898,60899 1mroA 548 22.74 a.89.1.1,d.58.31.2 18525,39443 1u5dA 108 23.52 b.55.1.1 119536 487dL 133 26.17 i.1.1.2 45839 1aqdB 198 26.27 b.1.1.2,d.19.1.1 21586,38160 2dfkA 402 26.63 2ag9A 164 26.94 1v61A 132 28.20 b.55.1.1 108389 1ppjE 196 28.48 b.33.1.1,f.23.12.1 104260,104261 2dreA 180 28.61 1skoB 130 29.43 d.110.7.1 105677 1nn5A 215 29.77 c.37.1.1 85892 1w8xP 117 30.57 i.6.1.1 114392 1iakA 199 31.36 b.1.1.2,d.19.1.1 21625,38199 1txdA 385 31.89 a.87.1.1,b.55.1.1 107422,107423 2hm7A 310 32.44 1ujrA 110 33.65 d.289.1.1 113258 1p0yA 444 34.63 a.166.1.1,b.85.7.3 87654,87655 1upqA 123 35.36 b.55.1.1 113392 1ieaA 192 35.52 b.1.1.2,d.19.1.1 21631,38205 1jchA 551 35.79 b.101.1.1,b.110.1.1,h.4.9.1 66491,66492,66493 1dbhA 354 36.78 a.87.1.1,b.55.1.1 18514,26967 1bb9A 115 38.36 b.34.2.1 24554 1cs0B 382 39.23 c.8.3.1,c.23.16.1 30740,31417 1xx0A 127 39.81 b.55.1.1 122412 1wl8A 189 40.35 c.23.16.1 120997 2r5vA 357 41.19 1sgoA 139 41.38 d.82.3.1 98857 1mmsA 140 42.77 a.4.7.1,d.47.1.1 16247,38766 1lqtA 456 43.22 c.3.1.1,c.4.1.1 74198,74199 2fcwB 80 43.54 g.12.1.1,g.12.1.1 133289,133290 1vetB 125 43.84 d.110.7.1 108554 1a6aB 187 44.40 b.1.1.2,d.19.1.1 21616,38190 1qdlB 195 44.95 c.23.16.1 31437 1x05A 129 48.45 b.55.1.1 121543 1ugpB 226 48.72 b.34.4.4 107832 2coaA 125 49.34 b.55.1.1 130672 1j6qA 136 52.47 b.40.9.1 77091 1v5pA 126 53.80 b.55.1.1 108382 1bb9 115 56.26 1pfsA 78 57.26 b.40.4.7 25391 1pbjA 125 62.04 d.37.1.1,d.37.1.1 94414,94415 1bak 119 62.46 1qexA 288 62.78 b.32.1.1 24425 1hdmA 201 64.21 b.1.1.2,d.19.1.1 21583,38157 1a31A 538 67.64 d.163.1.2,e.15.1.1 42170,43263 1bccE 196 69.88 b.33.1.1,f.23.12.1 24431,43699 2f2aB 483 70.06 a.182.1.2,d.128.1.5 132802,132803 1uebA 184 71.88 b.34.5.2,b.40.4.5,b.40.4.5 107782,107783,107784 1a6f 119 74.40 1a9xB 379 74.76 c.8.3.1,c.23.16.1 30732,31409 1ybyA 215 75.56 1e9eA 215 80.00 c.37.1.1 64810 1c3oB 382 80.87 c.8.3.1,c.23.16.1 30744,31421 1zvgA 66 80.89 1l6xA 207 82.09 b.1.1.2,b.1.1.2 73642,73643 2agcA 162 82.98 1k3yA 221 83.95 a.45.1.1,c.47.1.5 77245,77246 2qkoA 215 85.92 2f0cA 191 86.61 b.21.1.3,b.108.1.4 132665,132666 1kotA 119 88.70 d.15.1.3 68732