# List of top-scoring protein chains for t2k-w0.5-1-CB8-sep9-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2qpwA	149	6.61e-26		
2o8jA	281	3.80e-09		
2igqA	285	3.99e-09		
1zkkA	167	4.18e-08		
2rfiA	285	1.22e-07		
3bo5A	290	1.42e-07		
1n6aA	259	3.96e-07	b.76.2.1,b.85.7.1	80121,80122
1ml9A	302	5.77e-07	b.85.7.1	79282
2f69A	261	5.66e-06	b.76.2.1,b.85.7.1	133035,133036
1n3jA	119	1.07e-05	b.85.7.2	79963
1btkA	169	10.88	b.55.1.1	26959
2dtcA	126	11.50		
1btnA	106	17.01	b.55.1.1	26952
2h21A	440	20.25	a.166.1.1,b.85.7.3	135976,135977
1pls	113	24.53		
2dreA	180	24.74		
2p0dA	129	26.09		
1vetB	125	32.10	d.110.7.1	108554
2qdlA	165	32.56		
1skoB	130	32.86	d.110.7.1	105677
1btn	106	39.30		
1uv4A	293	39.50	b.67.2.1	119705
1t92A	116	42.52	d.24.1.3	112326
2ohcA	289	53.58		
1jalA	363	60.01	c.37.1.8,d.15.10.2	84138,84139
1ur4A	399	62.29	c.1.8.3	113402
1o7fA	469	64.05	a.4.5.31,b.82.3.2,b.82.3.2	81131,81132,81133
1u5fA	148	70.18	b.55.1.1	119542
1bx2B	191	72.60	b.1.1.2,d.19.1.1	21610,38184
1gnuA	117	74.98	d.15.1.3	65403
2d93A	134	78.00		
1faoA	126	85.07	b.55.1.1	26974
1ucsA	64	85.68	b.85.1.1	88466
1cs0B	382	87.87	c.8.3.1,c.23.16.1	30740,31417