# List of top-scoring protein chains for t2k-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2qpwA 149 7.78e-18 2igqA 285 4.47e-08 2o8jA 281 7.30e-08 2rfiA 285 8.18e-08 3bo5A 290 3.49e-06 1zkkA 167 3.36e-05 2f69A 261 0.000198 b.76.2.1,b.85.7.1 133035,133036 1n6aA 259 0.000310 b.76.2.1,b.85.7.1 80121,80122 1ml9A 302 0.000830 b.85.7.1 79282 1n3jA 119 0.4259 b.85.7.2 79963 1at3A 247 7.648 b.57.1.1 27021 2pbkA 228 8.135 3c8cA 240 10.13 2ag9A 164 11.14 2re9A 181 14.74 1m98A 317 16.05 a.175.1.1,d.17.4.6 78866,78867 1bd0A 388 17.15 b.49.2.2,c.1.6.1 26480,28642 2o1qA 145 21.06 1tulA 108 22.33 b.85.5.1 28373 1rcqA 357 23.45 b.49.2.2,c.1.6.1 104882,104883 1ja1A 622 23.51 b.43.4.1,c.23.5.2,c.25.1.4 62803,62804,62805 1fmtA 314 25.05 b.46.1.1,c.65.1.1 25758,34174 1x47A 98 25.07 d.50.1.1 121680 2aefA 234 26.13 1a34A 159 27.42 b.121.7.1 23286 2bwvA 440 27.45 c.55.2.1,d.127.1.1 129387,129388 1bdyA 123 29.80 b.7.1.1 23190 1f15A 218 30.29 b.121.4.5 23320 1d4vB 163 30.78 b.22.1.1 23884 2j4hA 193 30.89 2i5nH 258 31.04 b.41.1.1,f.23.10.1 137064,137065 2gnqA 336 31.37 2p9oA 169 32.10 1wl9A 440 32.27 c.55.2.1,d.127.1.1 120998,120999 1dxrH 258 32.86 b.41.1.1,f.23.10.1 25456,43433 1erjA 393 39.26 b.69.4.1 27660 2bnmA 198 40.46 a.35.1.3,b.82.1.10 128835,128836 2hzqA 174 43.37 2ouaA 188 44.65 1wp5A 323 46.10 b.68.10.1 114780 2ea3A 189 46.43 2qz7A 194 47.58 1gxrA 337 49.45 b.69.4.1 70722 1o4tA 133 52.61 b.82.1.9 86622 1xfcA 384 52.72 1hq0A 295 53.05 d.194.1.1 61122 2e5iA 124 54.09 1vfsA 386 55.43 b.49.2.2,c.1.6.1 108584,108585 2blnA 305 58.87 b.46.1.1,c.65.1.1 128734,128735 1yqyA 523 60.98 d.92.1.14,d.166.1.1 123903,123904 2j01Q 141 62.11 2geeA 203 64.09 2qxxA 190 64.38 2z8fA 412 65.19 1q5hA 147 66.00 b.85.4.1 95893 2q4mA 217 66.27 d.23.1.2 139870 1wgoA 123 68.34 b.1.3.1 114618 1h09A 338 70.05 b.109.1.1,c.1.8.8 83420,83421 1sixA 174 70.60 b.85.4.1 98892 1zi0A 307 71.16 1vctA 205 72.04 a.7.12.1,d.286.1.1 119986,119987 1i8dA 213 72.31 b.43.4.3,b.43.4.3 61953,61954 1a8mA 157 72.46 b.22.1.1 23868 2bmoB 194 72.82 d.17.4.4 128806 2r2cA 183 72.93 1avwB 171 73.02 b.42.4.1 25599 1ppjB 439 73.22 d.185.1.1,d.185.1.1 104254,104255 2boyA 254 73.41 1hzgA 295 75.38 d.194.1.1 61436 2bazA 142 76.17 1b6sA 355 76.19 b.84.2.1,c.30.1.1,d.142.1.2 28242,31649,41494 1nb8A 353 76.78 d.3.1.9 80385 1xtoA 311 78.63 d.157.1.6 116030 2qtzA 539 79.14 1giqA 413 81.34 d.166.1.1,d.166.1.1 76224,76225 2j7tA 302 84.41 1hx6A 394 84.71 b.121.2.1,b.121.2.1 58995,58996 2zc3C 125 85.34 1khxA 227 86.85 b.26.1.1 68631 1ako 268 87.21 2hd3A 103 88.05 1cvrA 435 88.26 b.1.18.12,c.17.1.2 21949,31006