# List of top-scoring protein chains for T0434.t06-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2o8jA 281 7.66e-29 2rfiA 285 8.55e-29 2r3aA 300 2.51e-23 1mvhA 299 3.65e-23 b.85.7.1 79500 3bo5A 290 2.17e-22 1ml9A 302 4.45e-21 b.85.7.1 79282 2qpwA 149 1.02e-15 2jv0A 163 1.03e-15 2bqzA 161 1.19e-15 1zkkA 167 1.35e-15 3cbpA 256 6.25e-11 1n6aA 259 6.61e-11 b.76.2.1,b.85.7.1 80121,80122 1n3jA 119 6.69e-11 b.85.7.2 79963 2f69A 261 6.86e-11 b.76.2.1,b.85.7.1 133035,133036 1xqhA 264 6.98e-11 b.76.2.1,b.85.7.1 115846,115847 1n6cA 297 1.46e-10 b.76.2.1,b.85.7.1 80123,80124 1h3iA 293 2.81e-10 b.76.2.1,b.85.7.1 76635,76636 1mufA 257 3.46e-10 b.76.2.1,b.85.7.1 79483,79484 1mt6A 280 7.25e-10 b.76.2.1,b.85.7.1 79446,79447 2hj1A 97 3.110 1yqtA 538 7.191 1iqqA 200 7.238 d.124.1.1 66274 1b43A 340 7.340 a.60.7.1,c.120.1.2 18092,33362 2pbrA 195 7.506 1wjmA 123 8.711 b.55.1.1 114702 2dphA 398 12.05 3bk7A 607 13.10 2rgxA 206 13.40 1x7aC 235 14.68 b.47.1.2 121781 2dfyC 195 14.99 1rutX 188 15.00 g.39.1.3,g.39.1.3,g.39.1.3,g.39.1.3 111939,111940,111941,111942 2h21A 440 15.59 a.166.1.1,b.85.7.3 135976,135977 1b9rA 105 15.69 d.15.4.1 37683 1p0yA 444 15.89 a.166.1.1,b.85.7.3 87654,87655 1m2oA 768 18.12 a.71.2.1,b.2.8.1,c.62.1.2,d.109.2.1,g.41.10.1 78480,78481,78482,78483,78484 2qtvA 772 19.86 1ny9A 143 21.61 a.181.1.1 86401 1r3sA 367 23.08 c.1.22.1 96963 1id2A 106 23.95 b.6.1.1 62288 1dl6A 58 26.80 g.41.3.1 45207 2uz5A 137 27.25 3hhrB 205 27.35 b.1.2.1,b.1.2.1 22005,22006 2aewA 205 27.38 b.1.2.1,b.1.2.1 126648,126649 1rlyA 60 28.35 g.41.3.1 104988 1mldA 314 29.61 c.2.1.5,d.162.1.1 30122,42089 1p4sA 181 29.91 c.37.1.1 94117 1h9dA 134 29.96 b.2.5.6 60821 1w1wA 430 30.45 c.37.1.12 114080 1ljmA 131 30.59 b.2.5.6 78051 1hwgB 237 30.95 b.1.2.1,b.1.2.1 21999,22000 1a22B 238 31.14 b.1.2.1,b.1.2.1 22003,22004 2bwjA 199 32.66 2dfdA 342 32.68 2iwqA 123 36.16 2e3jA 356 40.91 2ei9A 240 41.08 2oriA 216 41.45 2nutA 769 42.69 2zjfA 362 43.84 3bboF 259 43.89 1hjcA 123 45.60 b.2.5.6 61079 1co1A 115 45.60 b.2.5.6 22463 1axiB 236 45.63 b.1.2.1,b.1.2.1 21997,21998 1dqgA 135 46.01 b.42.2.2 25579 1cmoA 127 46.12 b.2.5.6 22462 1p3jA 217 46.28 c.37.1.1,g.41.2.1 94022,94023 1fwuA 134 46.39 b.42.2.2 25580 2fheA 216 46.56 a.45.1.1,c.47.1.5 17724,33018 1zowA 313 47.22 3akyA 220 47.25 c.37.1.1,g.41.2.1 31898,45199 2nv4A 147 47.26 2ig6A 150 48.09 2ogxA 276 49.08 2cw3A 280 50.16 2eelA 91 51.59 2oo7A 217 52.08 1ci3M 249 52.63 b.2.6.1,b.84.2.2 22480,28266 2osbA 216 52.86 2eu8A 216 54.19 1r3vA 367 56.09 c.1.22.1 96965 2q71A 356 56.40 2p82A 355 56.64 1bo1A 416 57.07 d.143.1.2 41591 2cdnA 201 57.55 c.37.1.1 130289 2ysmA 111 58.28 2p3sA 217 58.86 1xecA 329 60.69 c.10.2.7 115227 1oxxK 353 61.54 b.40.6.3,c.37.1.12 93715,93716 1oxsC 353 61.65 b.40.6.3,c.37.1.12 87519,87520 2idxA 196 62.38 1xkuA 330 62.76 c.10.2.7 115425 2f2aB 483 62.95 a.182.1.2,d.128.1.5 132802,132803 1r3qA 367 63.01 c.1.22.1 96961 1mjhA 162 64.88 c.26.2.4 31639 1kj1A 109 65.65 b.78.1.1 68638 2fcfA 103 66.09 b.36.1.1 133267 1r3wA 367 66.64 c.1.22.1 96966 1fukA 165 67.85 c.37.1.19 32409 1igrA 478 69.45 c.10.2.5,c.10.2.5,g.3.9.1 30877,30878,44188 1crzA 403 69.60 b.68.4.1,c.51.2.1 27629,33211 2czvC 120 69.79 2oo4A 234 71.09 1bwuQ 109 72.46 b.78.1.1 27996 1jphA 388 72.76 c.1.22.1 67022 1r3rA 367 73.10 c.1.22.1 96962 1jpkA 388 73.47 c.1.22.1 67026 1opbA 134 74.47 b.60.1.2 27216 1jpiA 388 74.70 c.1.22.1 67023 1rotA 149 76.49 d.26.1.1 38429 1u6zA 513 76.89 a.211.1.5,c.55.1.8,c.55.1.8 119608,119609,119610 1v9lA 421 78.89 c.2.1.7,c.58.1.1 113583,113584 1kj1D 109 79.05 b.78.1.1 68639 1eaqA 140 83.92 b.2.5.6 76144 1z57A 339 84.57 1nwbA 124 85.32 b.124.1.1 86296 2bbwA 246 85.55 1t94A 459 87.61 d.240.1.1,e.8.1.7 106701,106702 2floA 524 87.87 a.211.1.5,c.55.1.8,c.55.1.8 133733,133734,133735 2qajA 217 88.46 2e74C 289 88.61 2ajqA 704 89.52