# List of top-scoring protein chains for t06-w0.5-1-str4-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2rfiA 285 2.15e-38 2igqA 285 2.32e-38 2o8jA 281 2.14e-37 3bo5A 290 6.21e-37 2r3aA 300 2.02e-35 1ml9A 302 4.71e-34 b.85.7.1 79282 2qpwA 149 1.03e-33 1n6aA 259 8.17e-33 b.76.2.1,b.85.7.1 80121,80122 1zkkA 167 3.71e-32 2f69A 261 4.87e-32 b.76.2.1,b.85.7.1 133035,133036 1p0yA 444 1.22e-14 a.166.1.1,b.85.7.3 87654,87655 2h21A 440 3.37e-13 a.166.1.1,b.85.7.3 135976,135977 2p52A 196 1.058 1rutX 188 1.411 g.39.1.3,g.39.1.3,g.39.1.3,g.39.1.3 111939,111940,111941,111942 1iyeA 309 1.617 e.17.1.1 83786 2pcxA 220 1.876 2bazA 142 2.217 1gpr 162 2.459 2a1hA 365 2.490 e.17.1.1 125997 2ffuA 501 2.553 2ag4A 164 2.634 b.95.1.1 126717 2prvA 153 3.771 2coiA 386 3.935 1m2tB 263 4.030 b.42.2.1,b.42.2.1 84762,84763 2biqA 219 4.101 1mdaH 368 4.346 b.69.2.1 27637 1vkkA 154 4.592 d.109.1.2 108669 1q3oA 109 5.042 b.36.1.1 95700 1wrvA 308 5.773 2j21A 219 6.252 1a0gA 282 6.684 e.17.1.1 43276 2eiyA 308 8.184 1uolA 219 8.766 b.2.5.2 99695 2fwvA 226 8.894 1wcdJ 441 9.162 b.121.4.9 120887 1eaqA 140 9.399 b.2.5.6 76144 2df7A 458 10.15 b.121.4.9 131449 1gprA 162 10.44 b.84.3.1 28267 2vphA 100 11.59 3daaA 277 11.92 e.17.1.1 43272 2cf8H 257 14.37 2jz8A 87 14.69 1mzjA 339 14.93 c.95.1.2,c.95.1.2 79700,79701 1v8yA 170 15.19 d.113.1.1 113581 2a25A 193 16.19 1f3zA 161 16.65 b.84.3.1 28273 1at3A 247 17.74 b.57.1.1 27021 3c0dA 119 18.74 2ns9A 157 18.97 1sixA 174 19.24 b.85.4.1 98892 2p9oA 169 19.44 1kg0C 136 19.50 d.169.1.1 72445 2cqsA 842 20.38 1hg7A 66 20.44 b.85.1.1 28280 2ioiA 201 20.64 2f5yA 91 22.11 b.36.1.1 133015 1sefA 274 22.84 b.82.1.11 105452 1ucsA 64 23.01 b.85.1.1 88466 2ac0A 200 23.06 b.2.5.2 126539 1n13B 113 23.08 2bnmA 198 24.75 a.35.1.3,b.82.1.10 128835,128836 2oo4A 234 24.81 2f1lA 187 25.01 b.41.1.4,b.43.3.4 132780,132781 2ocsA 88 25.26 3bpuA 88 25.42 1rzhH 260 25.65 b.41.1.1,f.23.10.1 98162,98163 2p3wA 112 25.71 3cswA 285 28.11 2ozfA 92 28.16 1tyjA 170 30.27 b.2.2.2 119390 4ubpB 126 30.31 b.85.3.1 28345 2cxvA 219 30.66 b.47.1.4 131012 1tp5A 119 31.83 b.36.1.1 119305 2egoA 96 33.19 2q3gA 89 33.32 1uz5A 402 33.68 b.85.6.1,b.103.1.1,c.57.1.2 100217,100218,100219 1knmA 130 35.72 b.42.2.1 72781 1dunA 134 35.90 b.85.4.1 28371 2he4A 90 36.17 1xd7A 145 36.31 a.4.5.55 109566 1g9oA 91 36.32 b.36.1.1 60400 2pa1A 87 36.39 2basA 431 37.03 c.1.33.1,d.110.6.2 128244,128245 2fblA 153 37.30 d.63.1.2 133249 2pnlA 203 40.42 1kwaA 88 40.59 b.36.1.1 24772 1ywuA 149 42.96 b.45.2.1 124164 1wf7A 103 43.72 b.36.1.1 114577 2uzcA 88 43.76 1yhvA 297 45.20 1gg4A 452 45.55 c.59.1.1,c.98.1.1,c.72.2.1 33957,58985,58986 2he2A 102 47.32 1cruA 454 48.00 b.68.2.1 27617 1f7sA 139 48.86 d.109.1.2 40857 1r13A 148 49.14 d.169.1.1,h.1.1.1 96782,96783 1hx6A 394 49.34 b.121.2.1,b.121.2.1 58995,58996 2nutB 753 49.62 2qggA 182 50.57 1t0pB 86 51.42 1ybyA 215 51.76 1zo2A 129 52.00 1tkiA 321 54.94 d.144.1.7 41638 1w2tA 432 55.08 b.29.1.19,b.67.2.3 120607,120608 1u6eA 335 55.91 c.95.1.2,c.95.1.2 119568,119569 2o1qA 145 56.74 2gzvA 114 57.45 1n7eA 97 58.31 b.36.1.1 91691 1o8vA 134 59.41 b.60.1.2 86680 1grjA 158 60.57 a.2.1.1,d.26.1.2 15691,38433 1qavA 90 60.65 b.36.1.1 24777 2v90A 96 60.70 2e63A 170 61.94 2d4rA 147 62.73 d.129.3.6 131256 2pktA 91 65.31 1oh4A 179 66.51 b.18.1.18 92978 2yueA 168 66.92 1f3uB 171 67.10 b.65.1.1 27525 2b79A 144 67.27 2qdlA 165 67.87 1fi2A 201 68.59 b.82.1.2 59845 1csn 298 70.06 1xuuA 349 70.23 b.85.1.1,c.1.10.6 116067,116068 1buuA 168 70.72 d.169.1.1,h.1.1.1 42366,45388 1qauA 112 71.03 b.36.1.1 24779 2cqfA 63 71.97 2qg1A 92 73.05 1f7dA 136 73.51 b.85.4.1 28353 1nkqA 259 73.61 d.177.1.1 103862 2qkmB 266 73.76 1ejxB 101 74.18 b.85.3.1 83183 1dxrH 258 74.94 b.41.1.1,f.23.10.1 25456,43433 1s98A 107 75.17 b.124.1.1 105377 1twfK 120 75.31 d.74.3.2 112736 1qvcA 145 76.39 b.40.4.3 25284 1es5A 262 77.04 e.3.1.1 42679 1jpaA 312 77.08 d.144.1.7 67011 1rlyA 60 77.17 g.41.3.1 104988 1uwfA 158 78.03 b.2.3.2 119758 2fcfA 103 78.26 b.36.1.1 133267 3tglA 269 78.94 c.69.1.17 34733 2i5nH 258 79.30 b.41.1.1,f.23.10.1 137064,137065 1qexA 288 80.87 b.32.1.1 24425 1khcA 147 81.12 b.34.9.2 68608 2p49B 123 81.12 2cmgA 262 81.97 1earA 147 82.15 b.107.1.1,d.58.38.1 64875,64876 1k3bA 119 82.35 b.61.5.1 72016 2hdwA 367 82.83 1iz6A 138 83.73 b.34.5.2,b.40.4.5 76976,76977 5nulA 138 85.38 c.23.5.1 31191 2ic2A 115 85.54 b.1.2.1 137233 1mfgA 95 85.77 b.36.1.1 79043 1csnA 298 86.62 d.144.1.7 41664 2hlzA 312 87.34 2bgcA 238 88.30 a.4.5.4,b.82.3.3 128458,128459 1aym3 238 88.68 1d2oA 187 89.41 b.3.5.1,b.3.5.1 22625,22626 1zrrA 179 89.63 b.82.1.6 125555 1kt6A 183 89.66 b.60.1.1 84466