# List of top-scoring protein chains for t06-w0.5-1-str2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2rfiA 285 2.03e-38 2igqA 285 2.21e-38 2o8jA 281 3.87e-37 3bo5A 290 6.07e-37 2r3aA 300 1.70e-35 1ml9A 302 6.20e-34 b.85.7.1 79282 2qpwA 149 2.34e-33 1n6aA 259 1.30e-32 b.76.2.1,b.85.7.1 80121,80122 1zkkA 167 4.83e-32 2f69A 261 4.89e-32 b.76.2.1,b.85.7.1 133035,133036 1p0yA 444 2.42e-14 a.166.1.1,b.85.7.3 87654,87655 2h21A 440 3.47e-13 a.166.1.1,b.85.7.3 135976,135977 1rutX 188 1.030 g.39.1.3,g.39.1.3,g.39.1.3,g.39.1.3 111939,111940,111941,111942 2ag4A 164 1.631 b.95.1.1 126717 2p52A 196 1.909 2a1hA 365 1.996 e.17.1.1 125997 1m2tB 263 2.144 b.42.2.1,b.42.2.1 84762,84763 2bazA 142 2.522 1iyeA 309 2.692 e.17.1.1 83786 2prvA 153 3.199 2ffuA 501 3.431 2vphA 100 3.687 1vkkA 154 3.713 d.109.1.2 108669 2pcxA 220 4.737 1mdaH 368 4.758 b.69.2.1 27637 1q3oA 109 4.932 b.36.1.1 95700 1gpr 162 6.063 2oo4A 234 6.892 2biqA 219 6.926 1wcdJ 441 7.537 b.121.4.9 120887 1uz5A 402 7.757 b.85.6.1,b.103.1.1,c.57.1.2 100217,100218,100219 1a0gA 282 7.862 e.17.1.1 43276 3daaA 277 7.897 e.17.1.1 43272 2f1lA 187 9.732 b.41.1.4,b.43.3.4 132780,132781 3bpuA 88 10.45 2coiA 386 10.64 1wrvA 308 11.00 2df7A 458 11.42 b.121.4.9 131449 2fwvA 226 11.68 2j21A 219 11.90 2eiyA 308 12.78 2jz8A 87 13.17 2cf8H 257 15.54 1eaqA 140 15.61 b.2.5.6 76144 1n13B 113 15.65 2a25A 193 15.73 1kg0C 136 16.46 d.169.1.1 72445 1uolA 219 16.99 b.2.5.2 99695 2p3wA 112 17.27 1v8yA 170 17.81 d.113.1.1 113581 2ocsA 88 20.52 2b79A 144 20.98 2cqsA 842 21.52 2ozfA 92 21.57 2ns9A 157 21.71 2egoA 96 21.82 2bnmA 198 22.14 a.35.1.3,b.82.1.10 128835,128836 2p9oA 169 23.83 1gprA 162 23.88 b.84.3.1 28267 1sixA 174 24.76 b.85.4.1 98892 1g9oA 91 25.22 b.36.1.1 60400 2he4A 90 25.43 1sefA 274 25.68 b.82.1.11 105452 1w2tA 432 26.62 b.29.1.19,b.67.2.3 120607,120608 1at3A 247 26.69 b.57.1.1 27021 1f7sA 139 27.27 d.109.1.2 40857 1f3zA 161 28.63 b.84.3.1 28273 1rzhH 260 29.59 b.41.1.1,f.23.10.1 98162,98163 1s98A 107 30.43 b.124.1.1 105377 1ybyA 215 31.03 2q3gA 89 31.14 2qggA 182 31.76 1wu2A 396 32.42 b.85.6.1,b.103.1.1,c.57.1.2 114884,114885,114886 1ztcA 221 32.51 d.157.1.11 125635 2o1qA 145 32.86 1hg7A 66 32.89 b.85.1.1 28280 1f3uB 171 33.34 b.65.1.1 27525 2fcfA 103 35.00 b.36.1.1 133267 3tglA 269 35.03 c.69.1.17 34733 3c0dA 119 35.44 2fblA 153 35.59 d.63.1.2 133249 1sfnA 246 35.75 b.82.1.11 105496 2iiaA 131 36.73 2pnlA 203 37.26 2basA 431 37.87 c.1.33.1,d.110.6.2 128244,128245 2cqfA 63 38.06 1zxuA 217 38.26 d.23.1.2 125796 2e6zA 59 38.31 1mzjA 339 38.73 c.95.1.2,c.95.1.2 79700,79701 1tp5A 119 38.78 b.36.1.1 119305 5nulA 138 38.89 c.23.5.1 31191 2pa1A 87 39.42 1knmA 130 39.52 b.42.2.1 72781 2q4mA 217 40.39 d.23.1.2 139870 1zc3B 113 41.21 b.55.1.1 124881 2v90A 96 42.49 1z1zA 131 42.95 d.323.1.1 124366 2f5yA 91 43.30 b.36.1.1 133015 3cswA 285 43.45 1fi2A 201 44.04 b.82.1.2 59845 1zo2A 129 44.62 1tkiA 321 46.10 d.144.1.7 41638 2gzvA 114 47.01 1r13A 148 47.08 d.169.1.1,h.1.1.1 96782,96783 1grjA 158 48.13 a.2.1.1,d.26.1.2 15691,38433 2oryA 346 49.99 2uzcA 88 50.01 1dunA 134 51.57 b.85.4.1 28371 2he2A 102 51.80 1ucsA 64 51.98 b.85.1.1 88466 1yhvA 297 53.29 2qg1A 92 53.49 2g5fA 450 54.12 d.161.1.1 134654 1kwaA 88 55.99 b.36.1.1 24772 2oy0A 262 56.04 2ioiA 201 56.85 1n7eA 97 57.74 b.36.1.1 91691 2d4rA 147 58.38 d.129.3.6 131256 2pktA 91 58.68 1wf7A 103 59.20 b.36.1.1 114577 1d2oA 187 60.09 b.3.5.1,b.3.5.1 22625,22626 2ac0A 200 60.53 b.2.5.2 126539 1xd7A 145 60.58 a.4.5.55 109566 1fl1A 230 60.65 b.57.1.1 27023 2qkmB 266 61.67 1zzoA 136 63.58 c.47.1.10 125913 1qauA 112 64.59 b.36.1.1 24779 1uwfA 158 65.95 b.2.3.2 119758 1zowA 313 66.43 2iwnA 97 66.97 2nutB 753 67.49 1qpcA 279 68.04 d.144.1.7 41685 1kxgA 152 68.41 b.22.1.1 73145 2awxA 105 69.11 2jrrA 67 70.31 1u6eA 335 70.57 c.95.1.2,c.95.1.2 119568,119569 1gy7A 125 71.41 d.17.4.2 70738 1oh4A 179 71.59 b.18.1.18 92978 1x31D 99 72.80 1ywuA 149 73.38 b.45.2.1 124164 1e5rA 290 73.48 b.82.2.4 59276 1t0pB 86 75.63 1qvcA 145 76.57 b.40.4.3 25284 2fdxA 138 77.30 c.23.5.1 31192 1qavA 90 77.59 b.36.1.1 24777 1o8vA 134 78.75 b.60.1.2 86680 2gb4A 252 78.92 2cxvA 219 80.19 b.47.1.4 131012 2i1nA 102 80.95 1f7dA 136 81.43 b.85.4.1 28353 2i5nH 258 81.65 b.41.1.1,f.23.10.1 137064,137065 1qexA 288 82.41 b.32.1.1 24425 1earA 147 82.50 b.107.1.1,d.58.38.1 64875,64876 2opgA 98 83.37 1zjkA 403 85.69 b.47.1.2,g.18.1.1,g.18.1.1 125149,125150,125151 2f0aA 98 87.60 b.36.1.1 132661 2f4mA 295 87.88 1umhA 184 88.44 b.18.1.21 99605 2e63A 170 89.00 2jikA 101 89.37