# List of top-scoring protein chains for t06-w0.5-1-o_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2igqA 285 1.41e-41 2rfiA 285 1.94e-41 2o8jA 281 3.92e-40 3bo5A 290 8.11e-40 2r3aA 300 3.23e-38 1ml9A 302 1.09e-36 b.85.7.1 79282 2qpwA 149 1.13e-35 1n6aA 259 3.05e-35 b.76.2.1,b.85.7.1 80121,80122 1zkkA 167 1.30e-34 2f69A 261 2.94e-34 b.76.2.1,b.85.7.1 133035,133036 1p0yA 444 1.99e-15 a.166.1.1,b.85.7.3 87654,87655 2h21A 440 9.98e-15 a.166.1.1,b.85.7.3 135976,135977 2p52A 196 0.6308 2a1hA 365 0.6775 e.17.1.1 125997 1m2tB 263 1.148 b.42.2.1,b.42.2.1 84762,84763 2pcxA 220 1.502 2ag4A 164 1.602 b.95.1.1 126717 1rutX 188 1.763 g.39.1.3,g.39.1.3,g.39.1.3,g.39.1.3 111939,111940,111941,111942 1iyeA 309 1.888 e.17.1.1 83786 2coiA 386 2.109 2biqA 219 2.216 2bazA 142 2.754 2j21A 219 3.639 1gpr 162 3.756 1uolA 219 4.834 b.2.5.2 99695 2oo4A 234 4.999 2ffuA 501 5.030 1vkkA 154 5.077 d.109.1.2 108669 1mdaH 368 5.302 b.69.2.1 27637 1mzjA 339 5.896 c.95.1.2,c.95.1.2 79700,79701 2cqsA 842 6.613 1q3oA 109 7.502 b.36.1.1 95700 2vphA 100 7.580 2jz8A 87 7.896 1sefA 274 7.972 b.82.1.11 105452 2cf8H 257 8.096 1wrvA 308 8.247 2prvA 153 8.298 1uz5A 402 10.79 b.85.6.1,b.103.1.1,c.57.1.2 100217,100218,100219 2ac0A 200 11.30 b.2.5.2 126539 2ioiA 201 12.58 2fwvA 226 13.13 1a0gA 282 13.94 e.17.1.1 43276 1vm9A 111 14.41 b.33.1.1 108886 2eiyA 308 14.67 2p3wA 112 15.77 1kg0C 136 15.91 d.169.1.1 72445 3daaA 277 16.62 e.17.1.1 43272 1kxgA 152 17.90 b.22.1.1 73145 1gprA 162 18.04 b.84.3.1 28267 1eaqA 140 18.28 b.2.5.6 76144 2f1lA 187 19.57 b.41.1.4,b.43.3.4 132780,132781 3c0dA 119 20.43 1f3zA 161 21.33 b.84.3.1 28273 1flcA 432 21.38 b.19.1.3,c.23.10.2 23837,31337 2bnmA 198 23.09 a.35.1.3,b.82.1.10 128835,128836 1v8yA 170 23.66 d.113.1.1 113581 1o8vA 134 24.22 b.60.1.2 86680 1f3uB 171 24.57 b.65.1.1 27525 1n13B 113 25.81 1ybyA 215 29.12 2basA 431 29.57 c.1.33.1,d.110.6.2 128244,128245 1zzoA 136 29.91 c.47.1.10 125913 1xd7A 145 29.97 a.4.5.55 109566 2p9oA 169 30.32 1w2tA 432 31.18 b.29.1.19,b.67.2.3 120607,120608 1f7sA 139 32.89 d.109.1.2 40857 1zrrA 179 33.52 b.82.1.6 125555 1zo2A 129 33.63 1wu2A 396 33.88 b.85.6.1,b.103.1.1,c.57.1.2 114884,114885,114886 1xuuA 349 33.89 b.85.1.1,c.1.10.6 116067,116068 1sixA 174 34.46 b.85.4.1 98892 2fblA 153 35.29 d.63.1.2 133249 1wcdJ 441 35.55 b.121.4.9 120887 1oh4A 179 36.54 b.18.1.18 92978 2engA 210 36.97 b.52.1.1 26895 1zjkA 403 37.46 b.47.1.2,g.18.1.1,g.18.1.1 125149,125150,125151 2a25A 193 37.51 1hmt 132 38.70 1ywuA 149 40.49 b.45.2.1 124164 2hr7A 486 40.51 3bpuA 88 40.55 1hg7A 66 40.99 b.85.1.1 28280 2b79A 144 41.31 2ocsA 88 41.97 2ozfA 92 43.14 1hnjA 317 43.67 c.95.1.2,c.95.1.2 35969,35970 1zowA 313 45.38 5nulA 138 45.44 c.23.5.1 31191 1ztcA 221 45.82 d.157.1.11 125635 2df7A 458 45.83 b.121.4.9 131449 1g7nA 131 46.53 b.60.1.2 83274 1vyfA 135 46.89 b.60.1.2 108902 1rzhH 260 47.36 b.41.1.1,f.23.10.1 98162,98163 1zc3B 113 48.08 b.55.1.1 124881 2ge3A 170 49.63 d.108.1.1 135044 3bk5A 237 49.75 2cxvA 219 50.63 b.47.1.4 131012 2he4A 90 51.14 2p12A 176 51.71 2oryA 346 51.74 1u6eA 335 52.84 c.95.1.2,c.95.1.2 119568,119569 2ns9A 157 55.33 4ubpB 126 56.19 b.85.3.1 28345 1fjrA 195 56.52 b.102.1.1 59855 2yzsA 315 56.85 2cqfA 63 57.04 2oy0A 262 57.54 1ucsA 64 62.76 b.85.1.1 88466 1f7dA 136 63.97 b.85.4.1 28353 1sfnA 246 64.24 b.82.1.11 105496 1d2oA 187 64.36 b.3.5.1,b.3.5.1 22625,22626 2qkmB 266 64.84 2i5nH 258 65.03 b.41.1.1,f.23.10.1 137064,137065 2pnlA 203 65.52 1uypA 432 65.88 b.29.1.19,b.67.2.3 100176,100177 2uuuA 584 68.56 2nutB 753 69.50 2f5yA 91 69.64 b.36.1.1 133015 1gy7A 125 70.41 d.17.4.2 70738 2egoA 96 70.50 1dunA 134 70.62 b.85.4.1 28371 2he2A 102 71.63 1g9oA 91 72.14 b.36.1.1 60400 2fdxA 138 72.98 c.23.5.1 31192 2q3gA 89 73.86 2g5fA 450 74.75 d.161.1.1 134654 1uwfA 158 75.51 b.2.3.2 119758 1knmA 130 75.53 b.42.2.1 72781 2e26A 725 75.74 1r0uA 148 77.46 b.60.1.5 96741 1kqwA 134 78.47 b.60.1.2 72887 1l8fA 207 80.28 b.52.1.1 84537 1at3A 247 80.36 b.57.1.1 27021 1z1zA 131 80.51 d.323.1.1 124366 2pa1A 87 80.59 1tp5A 119 81.38 b.36.1.1 119305 2ovsA 118 82.70 3cngA 189 83.37 2o1qA 145 84.08 1vdwA 254 85.51 e.7.1.1 100569 2yueA 168 85.63 3c1aA 315 86.51 3c5oA 157 87.02 1earA 147 88.05 b.107.1.1,d.58.38.1 64875,64876 2e6zA 59 88.25 2qggA 182 88.37 1umhA 184 89.38 b.18.1.21 99605