# List of top-scoring protein chains for t06-w0.5-1-o_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2igqA 285 4.06e-40 2rfiA 285 6.39e-40 2o8jA 281 8.15e-39 3bo5A 290 3.55e-38 2r3aA 300 1.23e-36 1ml9A 302 3.55e-35 b.85.7.1 79282 2qpwA 149 3.52e-34 1n6aA 259 5.16e-34 b.76.2.1,b.85.7.1 80121,80122 2f69A 261 6.10e-33 b.76.2.1,b.85.7.1 133035,133036 1zkkA 167 6.80e-33 1p0yA 444 1.06e-14 a.166.1.1,b.85.7.3 87654,87655 2h21A 440 3.14e-14 a.166.1.1,b.85.7.3 135976,135977 2p52A 196 0.6476 2a1hA 365 0.9386 e.17.1.1 125997 1rutX 188 1.100 g.39.1.3,g.39.1.3,g.39.1.3,g.39.1.3 111939,111940,111941,111942 2pcxA 220 1.713 1m2tB 263 1.769 b.42.2.1,b.42.2.1 84762,84763 2bazA 142 1.784 1iyeA 309 1.800 e.17.1.1 83786 2ag4A 164 2.657 b.95.1.1 126717 2biqA 219 2.878 1vkkA 154 3.426 d.109.1.2 108669 1gpr 162 3.582 2j21A 219 3.642 2coiA 386 3.834 2oo4A 234 5.470 2cf8H 257 5.489 1uolA 219 6.185 b.2.5.2 99695 1mzjA 339 6.478 c.95.1.2,c.95.1.2 79700,79701 2ffuA 501 6.599 2cqsA 842 7.398 1q3oA 109 7.465 b.36.1.1 95700 1wrvA 308 7.878 2vphA 100 8.093 1mdaH 368 8.178 b.69.2.1 27637 2fwvA 226 9.228 1sefA 274 10.02 b.82.1.11 105452 2ac0A 200 10.58 b.2.5.2 126539 1uz5A 402 10.67 b.85.6.1,b.103.1.1,c.57.1.2 100217,100218,100219 2jz8A 87 11.16 2prvA 153 12.23 2eiyA 308 12.96 1wcdJ 441 13.02 b.121.4.9 120887 1kg0C 136 13.31 d.169.1.1 72445 2ioiA 201 13.44 1a0gA 282 14.18 e.17.1.1 43276 1eaqA 140 14.19 b.2.5.6 76144 3daaA 277 16.09 e.17.1.1 43272 1gprA 162 16.80 b.84.3.1 28267 2f1lA 187 16.93 b.41.1.4,b.43.3.4 132780,132781 2df7A 458 17.88 b.121.4.9 131449 1n13B 113 18.01 1kxgA 152 19.83 b.22.1.1 73145 1f3zA 161 19.86 b.84.3.1 28273 2p3wA 112 22.59 2hr7A 486 24.14 2bnmA 198 24.29 a.35.1.3,b.82.1.10 128835,128836 1v8yA 170 25.10 d.113.1.1 113581 1f7sA 139 27.06 d.109.1.2 40857 1flcA 432 28.15 b.19.1.3,c.23.10.2 23837,31337 1xd7A 145 28.56 a.4.5.55 109566 2cxvA 219 30.95 b.47.1.4 131012 2a25A 193 31.33 1ywuA 149 31.35 b.45.2.1 124164 1zjkA 403 32.08 b.47.1.2,g.18.1.1,g.18.1.1 125149,125150,125151 1zrrA 179 32.61 b.82.1.6 125555 1hg7A 66 32.74 b.85.1.1 28280 2p9oA 169 34.07 1wu2A 396 34.25 b.85.6.1,b.103.1.1,c.57.1.2 114884,114885,114886 1ztcA 221 34.57 d.157.1.11 125635 2ozfA 92 35.14 1sixA 174 36.01 b.85.4.1 98892 3bpuA 88 36.04 1f3uB 171 36.33 b.65.1.1 27525 2oryA 346 36.77 1xuuA 349 39.60 b.85.1.1,c.1.10.6 116067,116068 2ocsA 88 41.03 1vm9A 111 42.89 b.33.1.1 108886 1rzhH 260 43.29 b.41.1.1,f.23.10.1 98162,98163 2engA 210 43.76 b.52.1.1 26895 2fblA 153 46.81 d.63.1.2 133249 1zzoA 136 46.84 c.47.1.10 125913 1ybyA 215 47.60 1umhA 184 47.68 b.18.1.21 99605 2ns9A 157 47.90 2pnlA 203 48.55 5nulA 138 48.84 c.23.5.1 31191 2he4A 90 50.53 2b79A 144 51.54 1zowA 313 51.57 2basA 431 51.60 c.1.33.1,d.110.6.2 128244,128245 2e6zA 59 52.62 1zo2A 129 52.67 3bk5A 237 53.07 2cqfA 63 53.09 1hnjA 317 53.19 c.95.1.2,c.95.1.2 35969,35970 1g9oA 91 53.78 b.36.1.1 60400 1kt6A 183 54.55 b.60.1.1 84466 4ubpB 126 54.58 b.85.3.1 28345 2ic2A 115 55.08 b.1.2.1 137233 2uuuA 584 55.92 1at3A 247 56.20 b.57.1.1 27021 1f7dA 136 56.54 b.85.4.1 28353 1l8fA 207 57.14 b.52.1.1 84537 2q3gA 89 57.61 2f5yA 91 57.82 b.36.1.1 133015 3c0dA 119 58.09 2nutB 753 58.32 2e26A 725 58.56 2egoA 96 60.02 1u6eA 335 61.24 c.95.1.2,c.95.1.2 119568,119569 2je6I 251 61.96 2pa1A 87 62.89 1oh4A 179 63.43 b.18.1.18 92978 1ucsA 64 63.84 b.85.1.1 88466 2oy0A 262 66.34 2ovsA 118 66.77 1z1zA 131 67.46 d.323.1.1 124366 2gx9A 129 67.65 d.299.1.1 135828 2uzcA 88 68.55 1uwfA 158 68.74 b.2.3.2 119758 2i5nH 258 70.17 b.41.1.1,f.23.10.1 137064,137065 1lm5A 214 70.30 d.211.2.1 74029 1sfnA 246 70.90 b.82.1.11 105496 1dunA 134 73.91 b.85.4.1 28371 2gzvA 114 76.39 1zxuA 217 76.54 d.23.1.2 125796 2yueA 168 77.68 1w2tA 432 77.94 b.29.1.19,b.67.2.3 120607,120608 1fxxA 482 78.07 c.55.3.5 33726 2jrrA 67 80.32 1zc3B 113 80.96 b.55.1.1 124881 2o1qA 145 81.34 2yzsA 315 82.00 1kwaA 88 82.20 b.36.1.1 24772 2qggA 182 83.11 2fdxA 138 84.21 c.23.5.1 31192 1d2oA 187 84.38 b.3.5.1,b.3.5.1 22625,22626 2v90A 96 85.36 2ol1A 147 85.95 1hmt 132 87.58 1o8vA 134 87.64 b.60.1.2 86680 1tp5A 119 88.61 b.36.1.1 119305 1w6tA 444 89.03 c.1.11.1,d.54.1.1 120670,120671 1r0uA 148 89.45 b.60.1.5 96741 1earA 147 89.65 b.107.1.1,d.58.38.1 64875,64876