# List of top-scoring protein chains for t06-w0.5-1-o_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2igqA 285 3.21e-41 2rfiA 285 6.09e-41 2o8jA 281 6.81e-40 3bo5A 290 3.18e-39 2r3aA 300 1.05e-37 1ml9A 302 2.84e-36 b.85.7.1 79282 2qpwA 149 2.63e-35 1n6aA 259 5.53e-35 b.76.2.1,b.85.7.1 80121,80122 2f69A 261 5.52e-34 b.76.2.1,b.85.7.1 133035,133036 1zkkA 167 5.92e-34 1p0yA 444 2.83e-15 a.166.1.1,b.85.7.3 87654,87655 2h21A 440 1.28e-14 a.166.1.1,b.85.7.3 135976,135977 2p52A 196 0.9101 2a1hA 365 1.007 e.17.1.1 125997 1rutX 188 1.116 g.39.1.3,g.39.1.3,g.39.1.3,g.39.1.3 111939,111940,111941,111942 2bazA 142 1.332 1m2tB 263 1.394 b.42.2.1,b.42.2.1 84762,84763 1iyeA 309 1.704 e.17.1.1 83786 2pcxA 220 2.126 2ag4A 164 3.016 b.95.1.1 126717 1vkkA 154 3.685 d.109.1.2 108669 2biqA 219 3.841 2coiA 386 3.863 1gpr 162 4.327 2oo4A 234 4.427 2j21A 219 5.392 2fwvA 226 5.536 2vphA 100 6.265 1q3oA 109 6.356 b.36.1.1 95700 2cqsA 842 7.004 2ffuA 501 7.032 2cf8H 257 7.907 1uolA 219 7.934 b.2.5.2 99695 1wrvA 308 8.361 1mzjA 339 8.455 c.95.1.2,c.95.1.2 79700,79701 2jz8A 87 10.46 1mdaH 368 10.72 b.69.2.1 27637 1sefA 274 11.32 b.82.1.11 105452 2prvA 153 12.71 2eiyA 308 13.43 1eaqA 140 13.52 b.2.5.6 76144 1a0gA 282 13.65 e.17.1.1 43276 2ac0A 200 14.36 b.2.5.2 126539 1kg0C 136 14.62 d.169.1.1 72445 1kxgA 152 14.75 b.22.1.1 73145 1uz5A 402 15.53 b.85.6.1,b.103.1.1,c.57.1.2 100217,100218,100219 3daaA 277 16.39 e.17.1.1 43272 2ioiA 201 16.73 2f1lA 187 17.65 b.41.1.4,b.43.3.4 132780,132781 1n13B 113 19.08 1gprA 162 20.17 b.84.3.1 28267 1xd7A 145 20.23 a.4.5.55 109566 1v8yA 170 21.45 d.113.1.1 113581 1flcA 432 22.06 b.19.1.3,c.23.10.2 23837,31337 1f3zA 161 23.12 b.84.3.1 28273 3bpuA 88 24.78 1sixA 174 25.19 b.85.4.1 98892 1wcdJ 441 27.74 b.121.4.9 120887 1f7sA 139 27.87 d.109.1.2 40857 2p3wA 112 28.37 2p9oA 169 29.54 2cxvA 219 29.61 b.47.1.4 131012 2uuuA 584 30.51 2bnmA 198 31.34 a.35.1.3,b.82.1.10 128835,128836 2ocsA 88 32.29 1hg7A 66 32.41 b.85.1.1 28280 1ybyA 215 32.83 1vm9A 111 32.91 b.33.1.1 108886 2ozfA 92 33.77 2df7A 458 33.99 b.121.4.9 131449 1ywuA 149 34.60 b.45.2.1 124164 2hr7A 486 35.01 4ubpB 126 36.12 b.85.3.1 28345 2a25A 193 36.16 1zjkA 403 36.57 b.47.1.2,g.18.1.1,g.18.1.1 125149,125150,125151 2oryA 346 37.75 2engA 210 39.07 b.52.1.1 26895 1zrrA 179 39.34 b.82.1.6 125555 1umhA 184 39.65 b.18.1.21 99605 1ztcA 221 41.50 d.157.1.11 125635 2he4A 90 42.09 1zzoA 136 42.48 c.47.1.10 125913 1xuuA 349 43.31 b.85.1.1,c.1.10.6 116067,116068 2egoA 96 45.59 1wu2A 396 45.82 b.85.6.1,b.103.1.1,c.57.1.2 114884,114885,114886 1f3uB 171 46.19 b.65.1.1 27525 2pa1A 87 48.35 2cqfA 63 49.20 2je6I 251 49.56 2q3gA 89 51.65 1dunA 134 51.94 b.85.4.1 28371 2f5yA 91 52.18 b.36.1.1 133015 2nutB 753 52.28 2pnlA 203 53.02 1ucsA 64 53.04 b.85.1.1 88466 1kt6A 183 53.86 b.60.1.1 84466 1g9oA 91 54.22 b.36.1.1 60400 2ns9A 157 54.57 1f7dA 136 54.60 b.85.4.1 28353 1w2tA 432 54.84 b.29.1.19,b.67.2.3 120607,120608 2fblA 153 55.52 d.63.1.2 133249 2b79A 144 56.03 1zowA 313 56.14 1lm5A 214 57.11 d.211.2.1 74029 2e6zA 59 57.53 1oh4A 179 58.13 b.18.1.18 92978 2uzcA 88 58.77 1l8fA 207 59.03 b.52.1.1 84537 1zo2A 129 59.10 1sfnA 246 60.01 b.82.1.11 105496 1rzhH 260 60.24 b.41.1.1,f.23.10.1 98162,98163 3c0dA 119 61.34 2gx9A 129 63.26 d.299.1.1 135828 1hnjA 317 63.62 c.95.1.2,c.95.1.2 35969,35970 2ic2A 115 64.27 b.1.2.1 137233 1knmA 130 64.75 b.42.2.1 72781 1z1zA 131 64.87 d.323.1.1 124366 2bh0A 208 65.28 1u6eA 335 66.02 c.95.1.2,c.95.1.2 119568,119569 2basA 431 67.26 c.1.33.1,d.110.6.2 128244,128245 3bk5A 237 67.98 2gzvA 114 68.30 1at3A 247 69.19 b.57.1.1 27021 1gg4A 452 70.15 c.59.1.1,c.98.1.1,c.72.2.1 33957,58985,58986 5nulA 138 70.39 c.23.5.1 31191 2yzsA 315 70.98 2qggA 182 71.06 2v90A 96 71.53 1r0uA 148 75.36 b.60.1.5 96741 1uwfA 158 76.44 b.2.3.2 119758 1tp5A 119 76.76 b.36.1.1 119305 2e26A 725 80.62 2jrrA 67 81.08 1grjA 158 81.43 a.2.1.1,d.26.1.2 15691,38433 2he2A 102 82.36 1tyjA 170 82.38 b.2.2.2 119390 2oy0A 262 82.55 2i5nH 258 83.65 b.41.1.1,f.23.10.1 137064,137065 1eovA 487 84.40 b.40.4.1,d.104.1.1 25239,40760 2o1qA 145 84.93 2pktA 91 85.08 1t0pB 86 85.28 1zxuA 217 86.35 d.23.1.2 125796 2ol1A 147 86.88 1cruA 454 87.06 b.68.2.1 27617 3c5oA 157 87.94 1hmt 132 88.03 2qkmB 266 88.21 1g7nA 131 88.44 b.60.1.2 83274 1d2oA 187 89.49 b.3.5.1,b.3.5.1 22625,22626