# List of top-scoring protein chains for t06-w0.5-1-near-backbone-11-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2rfiA 285 9.03e-39 2igqA 285 1.14e-38 2o8jA 281 1.18e-37 3bo5A 290 4.33e-37 2r3aA 300 4.70e-36 1ml9A 302 5.72e-34 b.85.7.1 79282 2qpwA 149 1.14e-33 1zkkA 167 8.74e-33 2f69A 261 4.17e-32 b.76.2.1,b.85.7.1 133035,133036 1n6aA 259 2.72e-31 b.76.2.1,b.85.7.1 80121,80122 1p0yA 444 8.38e-14 a.166.1.1,b.85.7.3 87654,87655 2h21A 440 2.32e-13 a.166.1.1,b.85.7.3 135976,135977 2vphA 100 1.022 2pcxA 220 1.103 2p52A 196 1.540 1m2tB 263 1.677 b.42.2.1,b.42.2.1 84762,84763 1rutX 188 1.861 g.39.1.3,g.39.1.3,g.39.1.3,g.39.1.3 111939,111940,111941,111942 1q3oA 109 2.104 b.36.1.1 95700 1iyeA 309 2.532 e.17.1.1 83786 2bazA 142 2.832 2biqA 219 3.296 1mzjA 339 4.180 c.95.1.2,c.95.1.2 79700,79701 1gpr 162 4.937 1uolA 219 5.473 b.2.5.2 99695 3bpuA 88 5.564 2ffuA 501 5.787 1hg7A 66 6.270 b.85.1.1 28280 2ag4A 164 6.297 b.95.1.1 126717 1a0gA 282 6.367 e.17.1.1 43276 2j21A 219 7.441 1sixA 174 7.602 b.85.4.1 98892 2cf8H 257 7.815 2ozfA 92 8.389 1v8yA 170 8.537 d.113.1.1 113581 2he4A 90 8.679 2he2A 102 8.897 2fcfA 103 9.128 b.36.1.1 133267 2ioiA 201 9.354 2coiA 386 9.393 2prvA 153 9.526 3daaA 277 9.602 e.17.1.1 43272 1sfnA 246 10.11 b.82.1.11 105496 2p9oA 169 10.54 1ucsA 64 10.72 b.85.1.1 88466 2basA 431 11.23 c.1.33.1,d.110.6.2 128244,128245 1vkkA 154 11.64 d.109.1.2 108669 1kwaA 88 12.64 b.36.1.1 24772 2jilA 97 12.99 2egoA 96 13.76 2i1nA 102 13.76 2ac0A 200 13.82 b.2.5.2 126539 2v90A 96 14.18 1qauA 112 14.28 b.36.1.1 24779 2jikA 101 14.63 2gh1A 301 15.18 c.66.1.49 135170 2ebdA 309 15.42 1n7eA 97 15.61 b.36.1.1 91691 1v5mA 136 15.65 b.55.1.1 108379 2h2bA 107 15.96 1nf3C 128 15.99 b.36.1.1 85596 1gprA 162 15.99 b.84.3.1 28267 1tp5A 119 16.30 b.36.1.1 119305 1mfgA 95 17.41 b.36.1.1 79043 2p3wA 112 17.50 2gzvA 114 17.56 2ol1A 147 17.87 1whsB 153 18.34 1f7dA 136 18.48 b.85.4.1 28353 1qavA 90 18.64 b.36.1.1 24777 2q3gA 89 18.89 2awxA 105 19.68 2q9vA 90 19.91 1f3zA 161 20.03 b.84.3.1 28273 2fe5A 94 20.18 b.36.1.1 133323 2iwnA 97 20.32 2reyA 100 20.49 2i04A 85 21.02 1zowA 313 21.67 1wrvA 308 22.46 2fneA 117 22.52 b.36.1.1 133813 2f5yA 91 22.70 b.36.1.1 133015 1g9oA 91 23.45 b.36.1.1 60400 2qg1A 92 23.47 1ywuA 149 23.52 b.45.2.1 124164 2uzcA 88 25.56 2f0aA 98 26.21 b.36.1.1 132661 2eiyA 308 26.21 2ocsA 88 27.01 1xd7A 145 27.95 a.4.5.55 109566 1qexA 288 28.50 b.32.1.1 24425 3ullA 132 28.93 b.40.4.3 25282 1uz5A 402 28.94 b.85.6.1,b.103.1.1,c.57.1.2 100217,100218,100219 2opgA 98 28.99 2pa1A 87 29.91 2pktA 91 29.96 1uwfA 158 31.45 b.2.3.2 119758 2h3lA 103 31.52 b.36.1.1 136046 1f7sA 139 32.01 d.109.1.2 40857 1lm5A 214 32.17 d.211.2.1 74029 1hnjA 317 33.09 c.95.1.2,c.95.1.2 35969,35970 1q5hA 147 33.12 b.85.4.1 95893 3cngA 189 33.84 1dunA 134 34.26 b.85.4.1 28371 1zrrA 179 35.79 b.82.1.6 125555 1sefA 274 36.20 b.82.1.11 105452 2ge3A 170 36.31 d.108.1.1 135044 2jz8A 87 36.83 2e63A 170 38.82 1at3A 247 39.66 b.57.1.1 27021 2rczA 81 39.94 2ffjA 300 40.60 e.50.1.1 133387 1knmA 130 41.07 b.42.2.1 72781 1zo2A 129 42.50 2iwoA 120 42.84 3c5oA 157 43.72 1uouA 474 47.62 a.46.2.1,c.27.1.1,d.41.3.1 99706,99707,99708 2qkvA 96 49.01 1ihjA 98 49.83 b.36.1.1 62382 1mdaH 368 50.38 b.69.2.1 27637 1tz9A 367 51.20 c.1.15.6 107466 2a1hA 365 51.57 e.17.1.1 125997 1who 96 53.27 1wf7A 103 54.42 b.36.1.1 114577 1zzoA 136 54.75 c.47.1.10 125913 1dbhA 354 56.73 a.87.1.1,b.55.1.1 18514,26967 1xl7A 612 57.55 c.43.1.3,c.43.1.3 115438,115439 2oo4A 234 58.99 1eaqA 140 59.25 b.2.5.6 76144 2p0dA 129 60.06 2ga9D 469 60.87 2d58A 107 60.93 1q1hA 110 61.68 a.4.5.41 95580 1f3uB 171 61.81 b.65.1.1 27525 1yslA 402 62.67 2cqfA 63 62.72 2iiaA 131 63.75 1x45A 98 63.78 b.36.1.1 121679 1vh0A 161 64.75 c.116.1.3 100626 1u6eA 335 65.38 c.95.1.2,c.95.1.2 119568,119569 2pn1A 331 67.45 1jvwA 167 70.13 d.26.1.1 71907 1f7zA 233 72.41 b.47.1.2 59681 3bk5A 237 75.53 1y93A 159 77.82 d.92.1.11 122772 1xhbA 472 82.06 b.42.2.1,c.68.1.17 115290,115291 2cmgA 262 82.91 2pa2A 151 84.12 1vm9A 111 86.36 b.33.1.1 108886 1j3mA 129 86.86 d.129.7.1 103836 3cswA 285 87.23 2o6xA 310 87.43 1ybyA 215 88.09