# List of top-scoring protein chains for t06-w0.5-1-n_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2igqA 285 8.27e-45 2rfiA 285 1.02e-44 2o8jA 281 2.71e-43 3bo5A 290 4.97e-43 2r3aA 300 2.22e-41 1ml9A 302 8.90e-40 b.85.7.1 79282 2qpwA 149 3.71e-39 1n6aA 259 8.27e-38 b.76.2.1,b.85.7.1 80121,80122 1zkkA 167 5.32e-37 2f69A 261 6.00e-37 b.76.2.1,b.85.7.1 133035,133036 1p0yA 444 1.37e-16 a.166.1.1,b.85.7.3 87654,87655 2h21A 440 2.57e-15 a.166.1.1,b.85.7.3 135976,135977 1m2tB 263 0.5830 b.42.2.1,b.42.2.1 84762,84763 2p52A 196 0.7537 2coiA 386 0.8585 2ag4A 164 0.9753 b.95.1.1 126717 2a1hA 365 1.137 e.17.1.1 125997 1rutX 188 1.230 g.39.1.3,g.39.1.3,g.39.1.3,g.39.1.3 111939,111940,111941,111942 2pcxA 220 1.375 2prvA 153 1.536 2biqA 219 1.734 1iyeA 309 2.114 e.17.1.1 83786 1mdaH 368 2.365 b.69.2.1 27637 1gpr 162 2.366 2bazA 142 3.163 2ffuA 501 3.335 2cqsA 842 3.623 2j21A 219 3.985 2jz8A 87 4.550 2vphA 100 5.389 1uolA 219 6.915 b.2.5.2 99695 2a25A 193 7.381 1vkkA 154 7.438 d.109.1.2 108669 1q3oA 109 7.938 b.36.1.1 95700 1wrvA 308 8.943 2fwvA 226 10.84 1f3uB 171 11.04 b.65.1.1 27525 1f3zA 161 11.11 b.84.3.1 28273 1a0gA 282 11.57 e.17.1.1 43276 2nutB 753 11.91 1mzjA 339 11.95 c.95.1.2,c.95.1.2 79700,79701 1gprA 162 12.03 b.84.3.1 28267 3c0dA 119 12.62 2ioiA 201 13.10 2eiyA 308 14.30 2ac0A 200 14.44 b.2.5.2 126539 3daaA 277 15.03 e.17.1.1 43272 1v8yA 170 16.95 d.113.1.1 113581 2f1lA 187 17.26 b.41.1.4,b.43.3.4 132780,132781 2cf8H 257 18.59 1sefA 274 18.83 b.82.1.11 105452 1kg0C 136 19.20 d.169.1.1 72445 1vm9A 111 19.56 b.33.1.1 108886 1ywuA 149 20.08 b.45.2.1 124164 2oo4A 234 21.18 1uz5A 402 21.96 b.85.6.1,b.103.1.1,c.57.1.2 100217,100218,100219 3cngA 189 22.16 1zrrA 179 23.14 b.82.1.6 125555 1ybyA 215 23.40 1zzoA 136 24.23 c.47.1.10 125913 1w2tA 432 25.74 b.29.1.19,b.67.2.3 120607,120608 2fblA 153 26.23 d.63.1.2 133249 2qdlA 165 27.06 2basA 431 27.19 c.1.33.1,d.110.6.2 128244,128245 1xd7A 145 28.57 a.4.5.55 109566 1hg7A 66 28.71 b.85.1.1 28280 2ns9A 157 29.14 1rwhA 757 29.79 a.102.3.2,b.24.1.1,b.30.5.2 97984,97985,97986 1n13B 113 30.59 1eaqA 140 30.76 b.2.5.6 76144 1o8vA 134 30.82 b.60.1.2 86680 2bnmA 198 31.64 a.35.1.3,b.82.1.10 128835,128836 2p3wA 112 31.94 1wcdJ 441 32.59 b.121.4.9 120887 2htaA 309 33.32 1ucsA 64 35.38 b.85.1.1 88466 1flcA 432 36.24 b.19.1.3,c.23.10.2 23837,31337 3bk5A 237 37.87 1sixA 174 39.86 b.85.4.1 98892 1whoA 96 40.04 b.7.3.1 23215 1hmt 132 40.81 2gx9A 129 41.34 d.299.1.1 135828 1y7mA 164 41.63 b.160.1.1,d.7.1.1 122696,122697 2p9oA 169 41.84 1who 96 42.34 2o1qA 145 43.07 1f7sA 139 43.62 d.109.1.2 40857 2ozfA 92 43.77 2ovsA 118 43.92 1vyfA 135 44.83 b.60.1.2 108902 1u6eA 335 45.10 c.95.1.2,c.95.1.2 119568,119569 2cxvA 219 45.30 b.47.1.4 131012 3c5oA 157 45.79 3bpuA 88 45.80 2he2A 102 46.18 2df7A 458 46.62 b.121.4.9 131449 2ho9A 167 47.15 1at3A 247 47.49 b.57.1.1 27021 2qkmB 266 47.78 2hlzA 312 49.53 2e63A 170 49.83 1zowA 313 50.19 1g9oA 91 50.52 b.36.1.1 60400 1oh4A 179 50.77 b.18.1.18 92978 1tp5A 119 51.01 b.36.1.1 119305 1zjkA 403 52.35 b.47.1.2,g.18.1.1,g.18.1.1 125149,125150,125151 2p12A 176 53.42 1lm5A 214 53.49 d.211.2.1 74029 1g7nA 131 54.04 b.60.1.2 83274 1iz6A 138 54.20 b.34.5.2,b.40.4.5 76976,76977 3cswA 285 55.11 1t8oA 245 55.60 b.47.1.2 119187 2dpfA 115 55.98 1n7eA 97 56.15 b.36.1.1 91691 1earA 147 56.26 b.107.1.1,d.58.38.1 64875,64876 3bb7A 321 56.30 2zcwA 202 57.09 2ocsA 88 57.19 2a13A 166 58.21 b.60.1.8 125971 5nulA 138 58.22 c.23.5.1 31191 2cohA 202 58.67 a.4.5.4,b.82.3.2 130677,130678 2yueA 168 58.74 2he4A 90 59.12 1y93A 159 59.39 d.92.1.11 122772 2engA 210 59.78 b.52.1.1 26895 1zh1A 163 60.14 2egoA 96 60.21 1qexA 288 60.34 b.32.1.1 24425 2i5nH 258 60.39 b.41.1.1,f.23.10.1 137064,137065 1zc3B 113 60.92 b.55.1.1 124881 2o7rA 338 60.96 2ic2A 115 61.28 b.1.2.1 137233 2q3gA 89 61.77 2uuuA 584 63.25 1knmA 130 64.31 b.42.2.1 72781 2e26A 725 65.28 1l8fA 207 66.38 b.52.1.1 84537 2ge3A 170 67.33 d.108.1.1 135044 1vclA 432 68.06 b.42.2.1,b.42.2.1,d.281.1.1 108498,108499,108500 2hbwA 235 68.42 2b79A 144 69.22 2cqfA 63 71.21 1njhA 119 71.51 b.128.1.1 85787 2f5yA 91 72.37 b.36.1.1 133015 2ch4W 151 73.93 b.40.7.1 130451 2de6D 115 76.16 2pa1A 87 79.09 1ln1A 214 79.38 d.129.3.2 74038 1hnjA 317 79.46 c.95.1.2,c.95.1.2 35969,35970 1twfK 120 80.11 d.74.3.2 112736 1yhvA 297 81.12 1zo2A 129 81.42 1kt6A 183 83.03 b.60.1.1 84466 1dxrH 258 83.52 b.41.1.1,f.23.10.1 25456,43433 2oy0A 262 83.72 1zxuA 217 84.10 d.23.1.2 125796 1dzkA 157 84.11 b.60.1.1 27096 1ztcA 221 84.52 d.157.1.11 125635 2g5fA 450 85.41 d.161.1.1 134654 4ubpB 126 85.59 b.85.3.1 28345 2nygA 273 85.82 2yzhA 171 86.15 2gzvA 114 86.33 2q07A 306 87.50 2qg1A 92 87.92 2uzcA 88 87.98 1rzhH 260 88.87 b.41.1.1,f.23.10.1 98162,98163 1xuuA 349 89.59 b.85.1.1,c.1.10.6 116067,116068