# List of top-scoring protein chains for t06-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2rfiA 285 4.69e-25 2igqA 285 5.13e-25 2o8jA 281 1.41e-24 3bo5A 290 2.91e-24 2r3aA 300 2.98e-23 1ml9A 302 2.89e-22 b.85.7.1 79282 2qpwA 149 1.75e-21 1n6aA 259 5.22e-21 b.76.2.1,b.85.7.1 80121,80122 2f69A 261 1.59e-20 b.76.2.1,b.85.7.1 133035,133036 1zkkA 167 2.58e-20 2h21A 440 1.86e-08 a.166.1.1,b.85.7.3 135976,135977 1p0yA 444 2.99e-08 a.166.1.1,b.85.7.3 87654,87655 2nutA 769 1.356 2coiA 386 1.629 1ja1A 622 4.733 b.43.4.1,c.23.5.2,c.25.1.4 62803,62804,62805 2a1hA 365 6.165 e.17.1.1 125997 1w6tA 444 6.221 c.1.11.1,d.54.1.1 120670,120671 1cs0A 1073 7.185 a.92.1.1,c.24.1.1,c.30.1.1,c.30.1.1,d.142.1.2,d.142.1.2 18558,31487,31673,31674,41518,41519 2oo4A 234 9.247 2df7A 458 9.319 b.121.4.9 131449 1wcdJ 441 9.717 b.121.4.9 120887 2ffuA 501 10.23 2bazA 142 10.47 1gteA 1025 12.68 a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 70440,70441,70442,70443,70444 2ha9A 446 14.46 2gagA 965 14.85 1bf2A 750 14.96 b.1.18.2,b.71.1.1,c.1.8.1 21860,27787,28774 2nutB 753 15.08 1yp2A 451 15.10 b.81.1.4,c.68.1.6 123798,123799 1kblA 873 17.00 c.1.12.2,c.8.1.1,d.142.1.5 68384,68385,68386 3c5mA 396 17.41 1u3wA 374 17.54 b.35.1.2,c.2.1.1 113013,113014 1p80A 753 18.81 c.23.16.3,e.5.1.1 94337,94338 1vclA 432 18.82 b.42.2.1,b.42.2.1,d.281.1.1 108498,108499,108500 1rutX 188 20.14 g.39.1.3,g.39.1.3,g.39.1.3,g.39.1.3 111939,111940,111941,111942 1vcvA 226 21.47 c.1.10.1 119988 1jmxA 494 22.30 a.3.1.7,a.3.1.7,b.1.18.14,b.1.18.14,b.61.4.1 66901,66902,66903,66904,66905 1m2tB 263 23.09 b.42.2.1,b.42.2.1 84762,84763 3c2uA 538 23.66 2hbtA 247 24.75 1rzhH 260 24.84 b.41.1.1,f.23.10.1 98162,98163 1qwnA 1045 24.94 a.8.3.1,b.30.5.6,c.6.2.1 96487,96488,96489 1nuiA 255 26.61 e.13.1.2,g.41.3.2 86194,86195 2p52A 196 27.44 3c3dA 311 27.72 1cruA 454 27.77 b.68.2.1 27617 2o8bA 934 28.21 1dxrH 258 29.13 b.41.1.1,f.23.10.1 25456,43433 2gx9A 129 30.20 d.299.1.1 135828 2a25A 193 30.61 2bonA 332 31.79 2prvA 153 32.51 1ux6A 350 33.91 b.29.1.16,g.75.1.1 100145,100146 2htaA 309 34.31 1cl8A 276 36.26 c.52.1.1 33230 1ecfA 504 37.03 c.61.1.1,d.153.1.1 34053,41820 1p1jA 533 37.09 c.2.1.3,d.81.1.3 87687,87688 1x1nA 524 38.91 c.1.8.1 121593 1a9xA 1058 39.60 a.92.1.1,c.24.1.1,c.30.1.1,c.30.1.1,d.142.1.2,d.142.1.2 18550,31479,31657,31658,41502,41503 2obtA 327 40.11 2ze0A 555 40.43 1ygeA 839 40.47 a.119.1.1,b.12.1.1 19234,23634 2z8gA 549 41.70 1on3A 523 42.03 c.14.1.4,c.14.1.4 87107,87108 1zxuA 217 42.99 d.23.1.2 125796 1xd7A 145 43.48 a.4.5.55 109566 2iufA 688 43.53 2yx1A 336 44.15 1sjiA 350 44.31 2i5nH 258 44.47 b.41.1.1,f.23.10.1 137064,137065 2j5wA 1065 45.11 b.6.1.3,b.6.1.3,b.6.1.3,b.6.1.3,b.6.1.3 138067,138068,138069,138070,138071 1rqbA 539 45.77 a.5.7.2,c.1.10.5 105057,105058 1mwvA 714 47.46 a.93.1.3,a.93.1.3 85161,85162 2cn3A 737 48.00 1c30B 382 48.22 c.8.3.1,c.23.16.1 30736,31413 1rmg 422 49.59 1nr0A 611 50.92 b.69.4.1,b.69.4.1 86078,86079 2j6gA 266 53.88 1pg4A 652 55.04 e.23.1.1 88067 2h6eA 344 55.44 2ea7A 434 56.01 1w2tA 432 56.03 b.29.1.19,b.67.2.3 120607,120608 2piaA 321 59.32 b.43.4.2,c.25.1.2,d.15.4.2 25663,31553,37704 2drhA 361 61.80 2qzuA 491 61.90 1a9xB 379 62.02 c.8.3.1,c.23.16.1 30732,31409 2aaoA 166 62.09 1wyuB 474 62.13 c.67.1.7 121453 2pia 321 63.21 1k32A 1045 65.75 b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2 68068,68069,68070,68071 1eg5A 384 65.79 c.67.1.3 34429 1oygA 447 65.92 b.67.2.2 93726 3silA 379 66.47 b.68.1.1 27542 2bjfA 329 67.31 2biqA 219 68.58 2orzA 314 69.92 1pixA 587 70.69 c.14.1.4,c.14.1.4 118578,118579 2v3zA 440 73.24 1acc 735 74.27 2ns9A 157 74.69 2p8bA 369 74.86 1ru3A 732 74.91 e.26.1.3 97835 1jofA 365 75.85 b.69.10.1 71775 2i4lA 458 76.91 1a0gA 282 79.36 e.17.1.1 43276 1fcdA 401 80.09 c.3.1.5,c.3.1.5,d.87.1.1 30593,30594,40218 1ct9A 553 81.35 c.26.2.1,d.153.1.1 31616,41834 2v3vA 723 82.92 1tyjA 170 84.84 b.2.2.2 119390 1z2zA 446 85.69 2jz8A 87 87.63 2oy7A 320 89.07