# List of top-scoring protein chains for t06-w0.5-1-n_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2igqA 285 2.24e-43 2rfiA 285 4.04e-43 2o8jA 281 4.60e-42 3bo5A 290 2.11e-41 2r3aA 300 6.88e-40 1ml9A 302 1.26e-38 b.85.7.1 79282 2qpwA 149 1.69e-37 1n6aA 259 1.17e-36 b.76.2.1,b.85.7.1 80121,80122 2f69A 261 5.04e-36 b.76.2.1,b.85.7.1 133035,133036 1zkkA 167 1.74e-35 1p0yA 444 5.72e-16 a.166.1.1,b.85.7.3 87654,87655 2h21A 440 3.82e-15 a.166.1.1,b.85.7.3 135976,135977 2p52A 196 0.7559 1rutX 188 0.7684 g.39.1.3,g.39.1.3,g.39.1.3,g.39.1.3 111939,111940,111941,111942 1m2tB 263 0.8113 b.42.2.1,b.42.2.1 84762,84763 2coiA 386 0.8771 2pcxA 220 1.278 1iyeA 309 1.732 e.17.1.1 83786 2ag4A 164 1.752 b.95.1.1 126717 2bazA 142 1.778 1gpr 162 2.220 2biqA 219 2.292 2a1hA 365 2.372 e.17.1.1 125997 2ffuA 501 3.263 2prvA 153 3.720 2j21A 219 3.992 2cqsA 842 4.831 2jz8A 87 5.509 2fwvA 226 6.007 2vphA 100 6.041 1mdaH 368 6.043 b.69.2.1 27637 1uolA 219 6.850 b.2.5.2 99695 1vkkA 154 7.025 d.109.1.2 108669 1wrvA 308 7.792 1q3oA 109 8.548 b.36.1.1 95700 1a0gA 282 9.286 e.17.1.1 43276 2bnmA 198 9.99 a.35.1.3,b.82.1.10 128835,128836 1gprA 162 10.56 b.84.3.1 28267 2eiyA 308 10.81 3daaA 277 11.52 e.17.1.1 43272 2oo4A 234 12.25 2cf8H 257 12.42 1sefA 274 12.48 b.82.1.11 105452 1f3zA 161 12.55 b.84.3.1 28273 2ioiA 201 13.66 1uz5A 402 14.53 b.85.6.1,b.103.1.1,c.57.1.2 100217,100218,100219 1kg0C 136 14.84 d.169.1.1 72445 2ac0A 200 15.88 b.2.5.2 126539 1mzjA 339 17.30 c.95.1.2,c.95.1.2 79700,79701 1v8yA 170 17.45 d.113.1.1 113581 2a25A 193 18.67 2nutB 753 20.54 1wcdJ 441 21.26 b.121.4.9 120887 2df7A 458 21.41 b.121.4.9 131449 2ns9A 157 22.21 1sixA 174 22.93 b.85.4.1 98892 2f1lA 187 23.43 b.41.1.4,b.43.3.4 132780,132781 1n13B 113 23.85 1zrrA 179 24.62 b.82.1.6 125555 2cxvA 219 24.69 b.47.1.4 131012 1eaqA 140 25.11 b.2.5.6 76144 1f3uB 171 25.68 b.65.1.1 27525 2b79A 144 25.88 1zzoA 136 26.27 c.47.1.10 125913 2gx9A 129 26.30 d.299.1.1 135828 1xd7A 145 26.61 a.4.5.55 109566 1hg7A 66 26.80 b.85.1.1 28280 3c0dA 119 31.40 2ozfA 92 33.46 1ucsA 64 35.71 b.85.1.1 88466 2ocsA 88 36.47 2p9oA 169 37.80 1tyjA 170 39.89 b.2.2.2 119390 1umhA 184 40.83 b.18.1.21 99605 2egoA 96 41.60 1flcA 432 41.94 b.19.1.3,c.23.10.2 23837,31337 3cswA 285 42.04 2qkmB 266 42.50 2oryA 346 44.76 1f7sA 139 45.43 d.109.1.2 40857 1z1zA 131 47.38 d.323.1.1 124366 1at3A 247 47.48 b.57.1.1 27021 1ybyA 215 49.31 1xuuA 349 49.55 b.85.1.1,c.1.10.6 116067,116068 2he4A 90 49.67 3bpuA 88 49.69 1g9oA 91 49.72 b.36.1.1 60400 3bk5A 237 50.65 1ywuA 149 51.84 b.45.2.1 124164 2ovsA 118 52.15 1rwhA 757 53.25 a.102.3.2,b.24.1.1,b.30.5.2 97984,97985,97986 1knmA 130 53.35 b.42.2.1 72781 2uuuA 584 53.53 1gg4A 452 54.10 c.59.1.1,c.98.1.1,c.72.2.1 33957,58985,58986 2q3gA 89 54.72 1y93A 159 55.50 d.92.1.11 122772 2q4mA 217 55.63 d.23.1.2 139870 1zxuA 217 55.65 d.23.1.2 125796 1cruA 454 56.24 b.68.2.1 27617 2hlzA 312 57.73 1n7eA 97 58.44 b.36.1.1 91691 1w2tA 432 58.78 b.29.1.19,b.67.2.3 120607,120608 1dunA 134 58.81 b.85.4.1 28371 1zowA 313 58.90 1hx6A 394 59.42 b.121.2.1,b.121.2.1 58995,58996 4ubpB 126 59.48 b.85.3.1 28345 2f5yA 91 59.58 b.36.1.1 133015 2e63A 170 59.60 2he2A 102 60.41 1lm5A 214 61.15 d.211.2.1 74029 1ztcA 221 61.34 d.157.1.11 125635 2pa1A 87 62.77 1vm9A 111 63.03 b.33.1.1 108886 1yhvA 297 63.70 2cqfA 63 64.41 2basA 431 64.43 c.1.33.1,d.110.6.2 128244,128245 1u6eA 335 65.25 c.95.1.2,c.95.1.2 119568,119569 1tp5A 119 65.83 b.36.1.1 119305 1d2oA 187 66.74 b.3.5.1,b.3.5.1 22625,22626 1kxgA 152 67.47 b.22.1.1 73145 1vclA 432 67.67 b.42.2.1,b.42.2.1,d.281.1.1 108498,108499,108500 1viaA 175 67.94 c.37.1.2 100754 5nulA 138 68.34 c.23.5.1 31191 2yueA 168 69.57 2g5fA 450 70.32 d.161.1.1 134654 1rzhH 260 70.78 b.41.1.1,f.23.10.1 98162,98163 3tglA 269 71.89 c.69.1.17 34733 2p3wA 112 73.50 1oh4A 179 73.78 b.18.1.18 92978 1kwaA 88 74.00 b.36.1.1 24772 1t0pB 86 76.37 1zjkA 403 76.57 b.47.1.2,g.18.1.1,g.18.1.1 125149,125150,125151 3c5oA 157 77.00 1qexA 288 77.53 b.32.1.1 24425 1tkiA 321 77.62 d.144.1.7 41638 2o1qA 145 77.98 2pnlA 203 78.86 2uzcA 88 79.04 1earA 147 79.21 b.107.1.1,d.58.38.1 64875,64876 2o7rA 338 79.44 2e6zA 59 80.01 1e5rA 290 80.71 b.82.2.4 59276 1uwfA 158 83.66 b.2.3.2 119758 1fxxA 482 83.76 c.55.3.5 33726 2jrrA 67 84.59 2qg1A 92 84.66 1twfK 120 84.72 d.74.3.2 112736 2qggA 182 89.77