# List of top-scoring protein chains for t06-w0.5-1-alpha-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2igqA 285 6.51e-43 2rfiA 285 9.18e-43 2o8jA 281 1.05e-41 3bo5A 290 6.11e-41 2r3aA 300 1.70e-39 1ml9A 302 3.09e-38 b.85.7.1 79282 2qpwA 149 1.98e-36 1n6aA 259 2.36e-36 b.76.2.1,b.85.7.1 80121,80122 1zkkA 167 1.00e-35 2f69A 261 1.44e-35 b.76.2.1,b.85.7.1 133035,133036 1p0yA 444 8.64e-16 a.166.1.1,b.85.7.3 87654,87655 2h21A 440 1.35e-15 a.166.1.1,b.85.7.3 135976,135977 1rutX 188 0.3367 g.39.1.3,g.39.1.3,g.39.1.3,g.39.1.3 111939,111940,111941,111942 2ag4A 164 0.7268 b.95.1.1 126717 2bazA 142 0.7766 1iyeA 309 1.615 e.17.1.1 83786 2vphA 100 1.678 2p52A 196 2.162 1m2tB 263 2.469 b.42.2.1,b.42.2.1 84762,84763 2a1hA 365 2.502 e.17.1.1 125997 2coiA 386 4.231 1gpr 162 4.418 1q3oA 109 4.729 b.36.1.1 95700 2jz8A 87 4.962 1mzjA 339 5.183 c.95.1.2,c.95.1.2 79700,79701 2pcxA 220 6.119 1a0gA 282 7.159 e.17.1.1 43276 2oo4A 234 7.247 2ffuA 501 7.345 2biqA 219 7.432 1wrvA 308 7.584 1xd7A 145 7.861 a.4.5.55 109566 1vkkA 154 8.142 d.109.1.2 108669 1uz5A 402 8.476 b.85.6.1,b.103.1.1,c.57.1.2 100217,100218,100219 2cqsA 842 9.764 3daaA 277 9.798 e.17.1.1 43272 2cf8H 257 10.54 2p9oA 169 10.82 2eiyA 308 11.97 2egoA 96 13.95 1mdaH 368 14.37 b.69.2.1 27637 2j21A 219 15.35 1v8yA 170 15.53 d.113.1.1 113581 2prvA 153 16.32 2ozfA 92 16.87 3bpuA 88 16.94 1sefA 274 17.50 b.82.1.11 105452 1zjkA 403 17.70 b.47.1.2,g.18.1.1,g.18.1.1 125149,125150,125151 1gprA 162 18.65 b.84.3.1 28267 2fwvA 226 19.81 1n13B 113 20.09 1sixA 174 20.29 b.85.4.1 98892 2he4A 90 20.34 2ocsA 88 21.08 2b79A 144 21.83 1n7eA 97 22.92 b.36.1.1 91691 1f3zA 161 23.60 b.84.3.1 28273 1uolA 219 23.91 b.2.5.2 99695 3c0dA 119 23.91 2nutB 753 24.05 2p3wA 112 24.57 1zzoA 136 26.60 c.47.1.10 125913 2q3gA 89 27.31 1eaqA 140 28.23 b.2.5.6 76144 1hg7A 66 28.58 b.85.1.1 28280 2hr7A 486 28.73 1zrrA 179 28.89 b.82.1.6 125555 2f5yA 91 29.10 b.36.1.1 133015 2o2xA 218 29.10 1vm9A 111 29.81 b.33.1.1 108886 1uwfA 158 29.83 b.2.3.2 119758 2pa1A 87 30.81 2gx9A 129 31.54 d.299.1.1 135828 2he2A 102 31.63 1tp5A 119 31.65 b.36.1.1 119305 2engA 210 32.04 b.52.1.1 26895 2f1lA 187 33.11 b.41.1.4,b.43.3.4 132780,132781 1ybyA 215 33.44 1g9oA 91 33.48 b.36.1.1 60400 1flcA 432 33.75 b.19.1.3,c.23.10.2 23837,31337 1kxgA 152 34.33 b.22.1.1 73145 2ge3A 170 35.18 d.108.1.1 135044 2fcfA 103 35.86 b.36.1.1 133267 1f7dA 136 35.90 b.85.4.1 28353 2gzvA 114 36.32 1l8fA 207 37.08 b.52.1.1 84537 1q5hA 147 37.16 b.85.4.1 95893 2g5fA 450 37.35 d.161.1.1 134654 3cngA 189 37.74 1kwaA 88 38.05 b.36.1.1 24772 2v90A 96 38.30 3cswA 285 39.75 2ioiA 201 41.18 1oh4A 179 41.56 b.18.1.18 92978 1kg0C 136 42.32 d.169.1.1 72445 2fblA 153 42.47 d.63.1.2 133249 2uzcA 88 43.79 2ol1A 147 43.93 1ucsA 64 43.99 b.85.1.1 88466 2a25A 193 44.33 4ubpB 126 44.39 b.85.3.1 28345 1xuuA 349 44.76 b.85.1.1,c.1.10.6 116067,116068 2qg1A 92 45.12 2bnmA 198 45.76 a.35.1.3,b.82.1.10 128835,128836 3ullA 132 46.28 b.40.4.3 25282 1lm5A 214 46.41 d.211.2.1 74029 1wcdJ 441 49.13 b.121.4.9 120887 2df7A 458 50.74 b.121.4.9 131449 1viaA 175 50.76 c.37.1.2 100754 1n9pA 207 51.28 b.1.18.16 80343 2rioA 434 52.01 2opgA 98 52.21 2ch4W 151 52.42 b.40.7.1 130451 1knmA 130 53.25 b.42.2.1 72781 1rwhA 757 54.60 a.102.3.2,b.24.1.1,b.30.5.2 97984,97985,97986 1wu2A 396 55.01 b.85.6.1,b.103.1.1,c.57.1.2 114884,114885,114886 2awxA 105 56.51 1u6eA 335 57.29 c.95.1.2,c.95.1.2 119568,119569 1gg4A 452 57.85 c.59.1.1,c.98.1.1,c.72.2.1 33957,58985,58986 2i1nA 102 58.05 2ac0A 200 58.30 b.2.5.2 126539 1zo2A 129 58.78 2pktA 91 59.24 3c5oA 157 59.28 2basA 431 59.96 c.1.33.1,d.110.6.2 128244,128245 2pn1A 331 60.49 2uuuA 584 60.76 2hlzA 312 60.98 1hnjA 317 61.48 c.95.1.2,c.95.1.2 35969,35970 5nulA 138 63.28 c.23.5.1 31191 2qdlA 165 63.69 2e63A 170 66.68 2pnlA 203 66.93 2yueA 168 67.72 2gh1A 301 68.01 c.66.1.49 135170 1tz9A 367 68.73 c.1.15.6 107466 2hd0A 128 74.09 2cxvA 219 74.60 b.47.1.4 131012 2jikA 101 74.67 1zowA 313 74.82 1f7sA 139 75.42 d.109.1.2 40857 1wf7A 103 75.71 b.36.1.1 114577 2oy0A 262 78.26 2jrrA 67 78.74 2ebdA 309 79.37 2i6vA 87 80.27 1dunA 134 80.43 b.85.4.1 28371 1qauA 112 82.47 b.36.1.1 24779 1z1zA 131 84.06 d.323.1.1 124366 1ywuA 149 84.69 b.45.2.1 124164 1kzyC 259 85.18 c.15.1.4,c.15.1.4 73383,73384 2cqfA 63 85.40 2iwnA 97 85.90 3bk5A 237 86.04 2aujD 309 86.42 2gkpA 167 86.78 2qkvA 96 87.28 2e26A 725 87.47 1y93A 159 87.73 d.92.1.11 122772 2qalM 117 87.86 1dgwA 178 89.93 b.82.1.2 28090