# List of top-scoring protein chains for t06-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2rfiA 285 2.94e-42 2igqA 285 5.12e-42 2o8jA 281 2.25e-40 3bo5A 290 8.42e-39 2r3aA 300 2.35e-38 1ml9A 302 2.50e-35 b.85.7.1 79282 2qpwA 149 5.48e-35 1zkkA 167 7.74e-35 2f69A 261 6.91e-34 b.76.2.1,b.85.7.1 133035,133036 1n6aA 259 1.95e-33 b.76.2.1,b.85.7.1 80121,80122 1p0yA 444 6.19e-12 a.166.1.1,b.85.7.3 87654,87655 2h21A 440 2.33e-11 a.166.1.1,b.85.7.3 135976,135977 2bolA 314 2.375 2p52A 196 2.855 1q3oA 109 4.101 b.36.1.1 95700 2pcxA 220 4.176 1wyuA 438 4.398 c.67.1.7 121452 2biqA 219 5.554 1qexA 288 6.353 b.32.1.1 24425 1ia9A 280 6.530 d.144.1.5 62113 2bazA 142 6.969 2coiA 386 7.512 1rzhH 260 9.123 b.41.1.1,f.23.10.1 98162,98163 2gx9A 129 9.857 d.299.1.1 135828 1iyeA 309 10.16 e.17.1.1 83786 1dxrH 258 11.37 b.41.1.1,f.23.10.1 25456,43433 1uz5A 402 11.61 b.85.6.1,b.103.1.1,c.57.1.2 100217,100218,100219 3c5oA 157 14.17 1vkkA 154 15.78 d.109.1.2 108669 1v8yA 170 15.83 d.113.1.1 113581 2a1hA 365 15.95 e.17.1.1 125997 1sr2A 116 16.18 a.24.10.4 112109 2pn1A 331 17.19 2o1qA 145 17.57 2e74D 179 18.16 b.33.1.1,f.23.12.1 132049,132050 1ppjE 196 18.67 b.33.1.1,f.23.12.1 104260,104261 1fd9A 213 19.03 d.26.1.1 59771 2j21A 219 19.22 1b35A 260 19.61 b.121.4.1 23333 2p9oA 169 19.98 2ag4A 164 20.81 b.95.1.1 126717 1wyuB 474 20.95 c.67.1.7 121453 1nf3C 128 21.65 b.36.1.1 85596 1rutX 188 22.55 g.39.1.3,g.39.1.3,g.39.1.3,g.39.1.3 111939,111940,111941,111942 2qzvA 873 22.82 2vphA 100 22.97 1u7eB 154 23.12 2ioiA 201 24.49 3ullA 132 24.61 b.40.4.3 25282 1wrvA 308 24.73 2uvpA 186 25.31 1uolA 219 25.68 b.2.5.2 99695 1mzjA 339 25.85 c.95.1.2,c.95.1.2 79700,79701 1v5mA 136 26.27 b.55.1.1 108379 1zrrA 179 26.84 b.82.1.6 125555 3cngA 189 27.15 1q6uA 245 27.23 d.26.1.1 95998 1wu2A 396 28.23 b.85.6.1,b.103.1.1,c.57.1.2 114884,114885,114886 1f7dA 136 28.66 b.85.4.1 28353 1sixA 174 28.67 b.85.4.1 98892 2p0dA 129 29.82 2ffuA 501 29.99 1mhyB 395 30.71 a.25.1.2 16781 1js3A 486 32.03 c.67.1.6 67215 2i5nH 258 33.43 b.41.1.1,f.23.10.1 137064,137065 1a0gA 282 34.88 e.17.1.1 43276 3daaA 277 35.35 e.17.1.1 43272 1cs8A 316 37.05 d.3.1.1 37065 1f3uB 171 38.04 b.65.1.1 27525 2adzA 178 39.11 b.55.1.1 126599 1zuoA 186 39.51 d.20.1.1 125680 2pmzC 392 40.04 1kzyC 259 40.09 c.15.1.4,c.15.1.4 73383,73384 1x19A 359 40.54 1m2tB 263 40.64 b.42.2.1,b.42.2.1 84762,84763 1sesA 421 40.91 a.2.7.1,d.104.1.1 15710,40710 1eysH 259 44.97 b.41.1.1,f.23.10.1 25484,43517 2ozfA 92 45.00 1q3eA 207 45.57 b.82.3.2 95669 2eiyA 308 45.74 1p30A 952 46.20 b.121.2.2,b.121.2.2 93964,93965 2basA 431 47.54 c.1.33.1,d.110.6.2 128244,128245 2ebdA 309 49.67 2cqfA 63 49.74 2he4A 90 49.95 1gpr 162 50.19 2ffjA 300 50.80 e.50.1.1 133387 2iwnA 97 50.88 2ol1A 147 50.96 1uwfA 158 51.35 b.2.3.2 119758 2obeA 932 53.33 2cmzA 423 53.64 2ac0A 200 53.74 b.2.5.2 126539 1xkgA 312 55.53 d.3.1.1 122081 2gjcA 326 55.87 c.3.1.6 135280 2p3wA 112 57.07 1whsB 153 57.43 1iicA 422 59.46 d.108.1.2,d.108.1.2 62422,62423 3bb7A 321 59.59 1tiwA 602 60.15 a.176.1.1,c.1.23.2 112430,112431 1jvwA 167 60.62 d.26.1.1 71907 2ae0X 345 61.04 1bplB 294 61.25 b.71.1.1 27716 1ux5A 411 62.03 a.207.1.1 100144 1zowA 313 62.21 2o6xA 310 62.21 3bpuA 88 64.03 1zo2A 129 66.31 2a25A 193 70.14 2prvA 153 72.31 3bjuA 521 74.55 2b0aA 186 74.94 c.8.8.1 127632 2egoA 96 75.50 3c0dA 119 77.77 3bm4A 210 77.81 2p0wA 324 79.22 1o6sB 105 79.70 b.1.6.1 81096 1hxs3 237 79.83 1vyqA 173 79.91 b.85.4.1 120548 2qmaA 497 83.95 1zjkA 403 84.94 b.47.1.2,g.18.1.1,g.18.1.1 125149,125150,125151 1q5hA 147 85.56 b.85.4.1 95893 1njhA 119 85.60 b.128.1.1 85787 1ztpA 251 85.95 d.86.1.2 125649 1qavA 90 86.86 b.36.1.1 24777 1tkiA 321 87.17 d.144.1.7 41638 1up8A 598 87.26 a.111.1.2 99710 2ptmA 198 87.29 2e63A 170 87.86 2ckzA 161 87.90 1g9oA 91 88.69 b.36.1.1 60400 2dgmA 466 89.02 c.67.1.6 131508 2gaeA 346 89.21