# List of top-scoring protein chains for t06-w0.5-1-CB8-sep9-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2rfiA 285 1.93e-43 2igqA 285 3.47e-43 2o8jA 281 8.27e-42 3bo5A 290 2.84e-41 2r3aA 300 6.07e-40 1ml9A 302 7.96e-38 b.85.7.1 79282 2qpwA 149 4.77e-37 1zkkA 167 1.08e-35 2f69A 261 1.74e-35 b.76.2.1,b.85.7.1 133035,133036 1n6aA 259 2.64e-35 b.76.2.1,b.85.7.1 80121,80122 1p0yA 444 1.02e-14 a.166.1.1,b.85.7.3 87654,87655 2h21A 440 3.47e-14 a.166.1.1,b.85.7.3 135976,135977 2p52A 196 0.09696 2pcxA 220 0.3637 2biqA 219 0.5411 2ag4A 164 2.483 b.95.1.1 126717 1qexA 288 2.630 b.32.1.1 24425 1v8yA 170 3.454 d.113.1.1 113581 1q3oA 109 3.533 b.36.1.1 95700 1uolA 219 3.600 b.2.5.2 99695 2j21A 219 3.660 2ffuA 501 3.715 2ioiA 201 3.719 2ac0A 200 3.918 b.2.5.2 126539 1gpr 162 4.177 2prvA 153 4.707 2pn1A 331 5.009 2p9oA 169 6.759 3tglA 269 8.316 c.69.1.17 34733 1iyeA 309 9.304 e.17.1.1 83786 2a6tA 271 9.846 a.242.1.1,d.113.1.7 126309,126310 1vkkA 154 9.848 d.109.1.2 108669 2bazA 142 9.97 1mzjA 339 10.01 c.95.1.2,c.95.1.2 79700,79701 1o8vA 134 10.15 b.60.1.2 86680 2e63A 170 10.36 1m2tB 263 11.42 b.42.2.1,b.42.2.1 84762,84763 1eaqA 140 12.70 b.2.5.6 76144 1f3uB 171 13.06 b.65.1.1 27525 2pc1A 201 13.80 1uz5A 402 15.67 b.85.6.1,b.103.1.1,c.57.1.2 100217,100218,100219 1sixA 174 16.26 b.85.4.1 98892 1hg7A 66 16.52 b.85.1.1 28280 1gprA 162 16.76 b.84.3.1 28267 3cngA 189 16.91 1ys4A 354 18.07 1sefA 274 19.01 b.82.1.11 105452 1q5hA 147 19.35 b.85.4.1 95893 1at3A 247 19.43 b.57.1.1 27021 3bpuA 88 19.51 1dunA 134 20.22 b.85.4.1 28371 3daaA 277 20.89 e.17.1.1 43272 1f7dA 136 21.22 b.85.4.1 28353 1s95A 333 21.72 d.159.1.3 105375 1whsB 153 22.84 2basA 431 23.03 c.1.33.1,d.110.6.2 128244,128245 1f3zA 161 25.78 b.84.3.1 28273 1hmt 132 26.07 1ucsA 64 27.04 b.85.1.1 88466 1a0gA 282 27.11 e.17.1.1 43276 1wu2A 396 27.37 b.85.6.1,b.103.1.1,c.57.1.2 114884,114885,114886 2gh1A 301 27.52 c.66.1.49 135170 3ullA 132 28.96 b.40.4.3 25282 3bk5A 237 29.25 1xd7A 145 29.68 a.4.5.55 109566 1fl1A 230 30.11 b.57.1.1 27023 1f15A 218 30.27 b.121.4.5 23320 2p3wA 112 31.62 2axwA 134 32.34 2ge3A 170 33.44 d.108.1.1 135044 2coiA 386 33.60 1z4rA 168 35.14 d.108.1.1 124444 3c3pA 210 35.72 1tkiA 321 35.89 d.144.1.7 41638 2vphA 100 37.49 1uv4A 293 38.27 b.67.2.1 119705 1zowA 313 38.33 1g6oA 330 38.64 c.37.1.11 32430 1vyfA 135 38.83 b.60.1.2 108902 1vavA 222 39.21 b.29.1.18 108472 1hnjA 317 39.57 c.95.1.2,c.95.1.2 35969,35970 2f5yA 91 39.90 b.36.1.1 133015 2awxA 105 40.90 1ywuA 149 41.35 b.45.2.1 124164 2qkmB 266 41.93 1f7sA 139 44.33 d.109.1.2 40857 2i1nA 102 46.37 2ol1A 147 46.63 1uouA 474 46.67 a.46.2.1,c.27.1.1,d.41.3.1 99706,99707,99708 2ebdA 309 47.69 2oo4A 234 48.55 2ozfA 92 48.85 1zo2A 129 50.65 1rwhA 757 51.68 a.102.3.2,b.24.1.1,b.30.5.2 97984,97985,97986 2gx9A 129 51.90 d.299.1.1 135828 2dxeA 160 52.51 d.58.6.1 131870 2d1zA 436 52.65 2ae0X 345 52.73 2cwkA 160 53.30 d.58.6.1 130925 1rutX 188 53.61 g.39.1.3,g.39.1.3,g.39.1.3,g.39.1.3 111939,111940,111941,111942 1rzhH 260 53.88 b.41.1.1,f.23.10.1 98162,98163 2qdlA 165 54.53 3c1aA 315 55.61 2qg1A 92 56.02 2ffjA 300 56.43 e.50.1.1 133387 2ch4W 151 56.76 b.40.7.1 130451 2p65A 187 56.92 2eiyA 308 57.25 1g9oA 91 57.47 b.36.1.1 60400 2bfxA 284 57.87 1sfnA 246 58.85 b.82.1.11 105496 2gb4A 252 59.46 2cqfA 63 59.71 1vyqA 173 60.79 b.85.4.1 120548 1hmtA 132 60.97 b.60.1.2 27169 2he4A 90 61.47 2obfA 289 62.89 2fcfA 103 63.49 b.36.1.1 133267 2f0aA 98 64.07 b.36.1.1 132661 1xhbA 472 65.50 b.42.2.1,c.68.1.17 115290,115291 2ipxA 233 65.84 2jikA 101 65.85 1icmA 131 66.39 b.60.1.2 27174 1nhkL 144 66.55 d.58.6.1 39142 1q1hA 110 66.73 a.4.5.41 95580 1u6eA 335 67.56 c.95.1.2,c.95.1.2 119568,119569 1ucnA 152 69.42 d.58.6.1 99183 2yxeA 215 69.61 2fe5A 94 71.37 b.36.1.1 133323 1mfgA 95 71.71 b.36.1.1 79043 2b0aA 186 72.60 c.8.8.1 127632 1lm5A 214 74.30 d.211.2.1 74029 2gq1A 332 74.44 1knmA 130 75.04 b.42.2.1 72781 2gzvA 114 75.19 1wrvA 308 75.76 1tz9A 367 76.77 c.1.15.6 107466 1axiB 236 77.32 b.1.2.1,b.1.2.1 21997,21998 1mdc 133 77.73 1w99A 558 78.01 2blfA 373 78.64 2h3lA 103 81.01 b.36.1.1 136046 3c0wA 235 81.47 2qecA 204 81.59 1v04A 355 81.70 b.68.6.2 100240 3c5oA 157 81.76 1g8aA 227 82.28 c.66.1.3 90506 1grjA 158 82.32 a.2.1.1,d.26.1.2 15691,38433 1ybyA 215 82.79 1x31D 99 84.34 2a25A 193 84.65 2fblA 153 84.90 d.63.1.2 133249 1kwaA 88 85.27 b.36.1.1 24772 2ocsA 88 85.70 2jz8A 87 86.27 2hnkA 239 86.76 1s57A 153 88.06 d.58.6.1 112028 1on3A 523 88.07 c.14.1.4,c.14.1.4 87107,87108 2gaeA 346 88.81 1vdwA 254 89.01 e.7.1.1 100569 2q3gA 89 89.77