# List of top-scoring protein chains for T0434.t04-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2o8jA 281 8.73e-28 2rfiA 285 2.02e-27 2r3aA 300 2.24e-23 3bo5A 290 1.53e-21 1mvhA 299 2.89e-21 b.85.7.1 79500 1ml9A 302 2.42e-20 b.85.7.1 79282 2qpwA 149 2.18e-15 2jv0A 163 2.22e-15 2bqzA 161 6.99e-15 1zkkA 167 7.71e-15 1n3jA 119 7.05e-10 b.85.7.2 79963 1xqhA 264 2.51e-09 b.76.2.1,b.85.7.1 115846,115847 3cbpA 256 2.52e-09 1n6aA 259 2.57e-09 b.76.2.1,b.85.7.1 80121,80122 2f69A 261 2.58e-09 b.76.2.1,b.85.7.1 133035,133036 1n6cA 297 4.06e-09 b.76.2.1,b.85.7.1 80123,80124 1h3iA 293 7.82e-09 b.76.2.1,b.85.7.1 76635,76636 1mufA 257 9.42e-09 b.76.2.1,b.85.7.1 79483,79484 1mt6A 280 1.82e-08 b.76.2.1,b.85.7.1 79446,79447 2rgxA 206 4.152 2pbrA 195 4.542 1iqqA 200 9.848 d.124.1.1 66274 3bboF 259 10.34 3bqxA 150 10.79 1wjmA 123 10.92 b.55.1.1 114702 1dqgA 135 11.63 b.42.2.2 25579 1fwuA 134 11.77 b.42.2.2 25580 1yqtA 538 11.80 2h21A 440 11.98 a.166.1.1,b.85.7.3 135976,135977 1pdgA 109 12.29 g.17.1.1 44748 2cavA 445 12.51 b.82.1.2,b.82.1.2 28094,28095 1p0yA 444 12.53 a.166.1.1,b.85.7.3 87654,87655 1p4sA 181 13.49 c.37.1.1 94117 2aewA 205 13.49 b.1.2.1,b.1.2.1 126648,126649 3hhrB 205 13.66 b.1.2.1,b.1.2.1 22005,22006 1hwgB 237 16.04 b.1.2.1,b.1.2.1 21999,22000 1a22B 238 16.21 b.1.2.1,b.1.2.1 22003,22004 2cdnA 201 16.26 c.37.1.1 130289 2cw3A 280 21.95 1x7aC 235 22.84 b.47.1.2 121781 1vfyA 73 23.73 g.50.1.1 45357 1id2A 106 25.45 b.6.1.1 62288 1b9rA 105 25.53 d.15.4.1 37683 1axiB 236 27.11 b.1.2.1,b.1.2.1 21997,21998 1rlyA 60 27.13 g.41.3.1 104988 1dl6A 58 27.81 g.41.3.1 45207 1tevA 196 28.62 c.37.1.1 106817 1v9lA 421 30.02 c.2.1.7,c.58.1.1 113583,113584 2nutA 769 31.50 1nrwA 288 33.66 c.108.1.10 86128 2jisA 515 35.16 1b43A 340 37.22 a.60.7.1,c.120.1.2 18092,33362 1ljmA 131 39.05 b.2.5.6 78051 1co1A 115 40.87 b.2.5.6 22463 1h9dA 134 41.09 b.2.5.6 60821 1mldA 314 44.22 c.2.1.5,d.162.1.1 30122,42089 1aquA 297 47.16 c.37.1.5 31942 1dusA 194 47.30 c.66.1.4 34182 1hjcA 123 49.49 b.2.5.6 61079 3bk7A 607 51.64 2f2aB 483 51.79 a.182.1.2,d.128.1.5 132802,132803 2ysmA 111 52.74 1m2oA 768 54.99 a.71.2.1,b.2.8.1,c.62.1.2,d.109.2.1,g.41.10.1 78480,78481,78482,78483,78484 1zuhA 168 55.96 2iugA 120 57.81 2v1uA 387 57.84 2qtvA 772 59.53 1cmoA 127 60.07 b.2.5.6 22462 1bwuQ 109 60.76 b.78.1.1 27996 1sr2A 116 62.46 a.24.10.4 112109 2h0dA 97 64.87 1vk6A 269 67.19 d.113.1.4,d.113.1.4,g.41.14.1 100852,111609,111610 3daaA 277 69.18 e.17.1.1 43272 2idxA 196 69.51 5daaA 277 69.85 e.17.1.1 43282 2cklA 108 69.96 2fheA 216 71.50 a.45.1.1,c.47.1.5 17724,33018 2dphA 398 71.77 2jh1A 246 72.88 1mmqA 170 72.99 d.92.1.11 40396 1a0gA 282 74.32 e.17.1.1 43276 1z0fA 179 75.98 c.37.1.8 124313 2iwqA 123 76.13 1g2wA 282 76.35 e.17.1.1 43284 1daaA 282 76.42 e.17.1.1 43270 1fd0A 235 76.58 a.123.1.1 76164 2nq3A 173 76.59 b.7.1.1 138452 1fcyA 236 77.21 a.123.1.1 19282 1kj1A 109 77.26 b.78.1.1 68638 2pnaA 104 77.26 d.93.1.1 40501 2qgpA 112 78.23 2eelA 91 78.66 2ddyA 173 78.85 d.92.1.11 131408 2bwjA 199 79.29 2dfdA 342 79.32 2b25A 336 79.60 c.66.1.13 127699 1trsA 105 85.69 c.47.1.1 32753 1fu5A 111 85.85 d.93.1.1 40505 1kj1D 109 87.37 b.78.1.1 68639 1exaA 246 88.11 a.123.1.1 19285 2bbwA 246 88.85 1z57A 339 89.88