# List of top-scoring protein chains for t04-w0.5-1-str4-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2rfiA 285 6.16e-34 2o8jA 281 2.85e-33 2igqA 285 1.62e-32 3bo5A 290 1.96e-31 2r3aA 300 3.16e-31 1ml9A 302 8.81e-30 b.85.7.1 79282 1n6aA 259 1.55e-29 b.76.2.1,b.85.7.1 80121,80122 2f69A 261 1.94e-29 b.76.2.1,b.85.7.1 133035,133036 1zkkA 167 2.63e-29 2qpwA 149 2.72e-29 1n3jA 119 1.50e-21 b.85.7.2 79963 2h21A 440 1.78e-13 a.166.1.1,b.85.7.3 135976,135977 1p0yA 444 1.44e-12 a.166.1.1,b.85.7.3 87654,87655 2p52A 196 0.7827 2vphA 100 2.030 2eng 210 2.631 1be9A 119 3.153 b.36.1.1 24774 2pcxA 220 3.869 1iyeA 309 4.636 e.17.1.1 83786 2prvA 153 5.242 1wrvA 308 5.407 1l8fA 207 5.771 b.52.1.1 84537 1gky 187 6.060 1gpr 162 6.292 2ag4A 164 6.784 b.95.1.1 126717 2eiyA 308 7.025 2ns9A 157 7.669 2ag9A 164 7.702 3daaA 277 9.082 e.17.1.1 43272 1a0gA 282 9.311 e.17.1.1 43276 1uwfA 158 11.05 b.2.3.2 119758 1hq8A 123 11.16 d.169.1.1 61127 1k2fA 190 11.20 b.8.1.2 68054 2p9oA 169 11.34 1gprA 162 12.11 b.84.3.1 28267 2a1hA 365 12.26 e.17.1.1 125997 1wmzA 140 12.28 d.169.1.1 109422 1v61A 132 12.33 b.55.1.1 108389 1wcdJ 441 12.36 b.121.4.9 120887 1v5lA 103 12.41 b.36.1.1 108378 2bmwA 304 13.31 b.43.4.2,c.25.1.1 128815,128816 2apr 325 13.56 1tr7A 164 13.61 b.2.3.2 119328 2j3hA 345 14.09 1uasA 362 14.19 b.71.1.1,c.1.8.1 88388,88389 2a25A 193 14.33 1h9dA 134 14.35 b.2.5.6 60821 2fwvA 226 14.70 1vlyA 338 15.26 b.44.2.1,d.250.1.1 108871,108872 1rutX 188 15.90 g.39.1.3,g.39.1.3,g.39.1.3,g.39.1.3 111939,111940,111941,111942 1f3zA 161 16.03 b.84.3.1 28273 1f7zA 233 16.88 b.47.1.2 59681 2q3gA 89 17.55 1u5fA 148 18.21 b.55.1.1 119542 2engA 210 18.76 b.52.1.1 26895 1ekfA 365 19.45 e.17.1.1 59445 1g9oA 91 19.72 b.36.1.1 60400 1zhvA 134 20.60 d.58.18.8,d.58.18.8 125109,125110 1y7mA 164 20.80 b.160.1.1,d.7.1.1 122696,122697 1nziA 159 21.66 b.23.1.1,g.3.11.1 86449,86450 1vfyA 73 21.71 g.50.1.1 45357 1onqA 283 22.86 b.1.1.2,d.19.1.1 93365,93366 2pktA 91 23.04 1f7dA 136 24.07 b.85.4.1 28353 2ozfA 92 24.65 1kbpA 432 25.84 b.1.12.1,d.159.1.1 22349,42068 2de6A 392 26.36 b.33.1.2,d.129.3.3 131415,131416 3bpuA 88 26.53 1o54A 277 26.91 c.66.1.13 92482 1tp5A 119 27.60 b.36.1.1 119305 1sffA 426 27.94 c.67.1.4 105482 1wf7A 103 29.18 b.36.1.1 114577 1mq7A 154 31.24 b.85.4.1 79404 2ac0A 200 31.61 b.2.5.2 126539 1gy7A 125 32.57 d.17.4.2 70738 1nf3C 128 32.79 b.36.1.1 85596 1qauA 112 33.25 b.36.1.1 24779 1zpsA 138 33.33 b.168.1.1 125473 2bkrA 212 33.79 d.3.1.7 128710 1sixA 174 34.26 b.85.4.1 98892 1dvpA 220 34.36 a.118.9.2,g.50.1.1 19216,45358 1mpuA 138 34.38 d.169.1.1 85040 2ocsA 88 34.39 2v90A 96 34.41 1qavA 90 34.48 b.36.1.1 24777 1ojjA 402 35.01 b.29.1.10 93130 2o1qA 145 35.91 2gc1A 188 36.12 b.82.1.7 134928 2qeaA 160 38.07 1xjcA 169 39.48 c.37.1.10 115387 2zdrA 349 39.93 2e63A 170 40.24 2ok8A 316 40.39 1v6fA 151 42.34 d.109.1.2 108395 1q5hA 147 42.58 b.85.4.1 95893 1l1dA 152 42.99 b.88.1.3 73452 1yo8A 634 43.15 1zc3B 113 44.09 b.55.1.1 124881 2yzuA 109 44.22 2df7A 458 44.24 b.121.4.9 131449 2f5yA 91 44.28 b.36.1.1 133015 2plrA 213 44.48 2b79A 144 45.64 1m40A 263 46.54 e.3.1.1 74437 1tw4A 125 47.68 b.60.1.2 112690 1n7eA 97 47.89 b.36.1.1 91691 1u1zA 168 48.08 d.38.1.6 107602 1sz6B 263 48.37 b.42.2.1,b.42.2.1 112172,112173 1z8fA 228 48.45 2nsqA 155 49.69 1xuuA 349 49.74 b.85.1.1,c.1.10.6 116067,116068 1eaqA 140 49.91 b.2.5.6 76144 3cswA 285 50.23 2iiaA 131 52.19 2pa1A 87 52.52 2qdlA 165 52.75 2coiA 386 53.34 2qntA 141 53.45 1dunA 134 53.95 b.85.4.1 28371 1ol0A 121 54.12 b.1.1.1 93296 1knmA 130 54.43 b.42.2.1 72781 2bwjA 199 55.00 1whmA 92 55.31 b.34.10.1 114647 1kqfA 1015 56.53 b.52.2.2,c.81.1.1 72871,72872 2g1lA 104 56.55 b.26.1.2 134520 1auvA 311 57.43 c.30.1.5,d.142.1.3 31723,41558 1q3oA 109 57.53 b.36.1.1 95700 1inlA 296 58.22 c.66.1.17 66220 2z0bA 131 58.44 2cvkA 110 58.85 2ho9A 167 59.34 2he2A 102 59.69 2iwoA 120 60.10 1h30A 422 60.81 b.29.1.4,b.29.1.4 76604,76605 1bkf 107 62.60 2ol1A 147 62.88 2i5nH 258 63.05 b.41.1.1,f.23.10.1 137064,137065 1htqA 477 63.81 d.15.9.1,d.128.1.1 71035,71036 1thxA 115 64.93 c.47.1.1 32732 2egoA 96 65.07 1rlyA 60 65.46 g.41.3.1 104988 1abrB 267 67.71 b.42.2.1,b.42.2.1 25563,25564 1wu2A 396 69.24 b.85.6.1,b.103.1.1,c.57.1.2 114884,114885,114886 2f1wA 158 70.04 2vp4A 230 70.12 2pbrA 195 71.13 2e26A 725 71.85 2he4A 90 73.11 1p6pA 125 73.57 b.60.1.2 87839 2e0qA 104 73.63 1dymA 402 76.55 b.29.1.10 24304 2eu8A 216 77.62 1u5mA 73 78.45 g.27.1.2 113043 1jv4A 162 78.64 b.60.1.1 67343 1zowA 313 78.94 1eo9A 209 78.98 b.3.6.1 22731 2ch4W 151 79.99 b.40.7.1 130451 2a13A 166 81.17 b.60.1.8 125971 1ybyA 215 81.30 1t0pB 86 81.74 1kg0C 136 82.17 d.169.1.1 72445 2gy5A 423 82.84 1lm5A 214 83.79 d.211.2.1 74029 1lcyA 325 83.85 b.36.1.4,b.47.1.1 73834,73835 2a6aA 218 83.96 c.55.1.9,c.55.1.9 126231,126232 2uzcA 88 85.43 1e87A 118 85.54 d.169.1.1 42327 1kwaA 88 86.27 b.36.1.1 24772 1l6oA 95 86.75 b.36.1.1 84534 1gl4A 285 87.67 d.22.1.2,g.3.11.5 65286,65287 1n27A 96 88.33 b.34.9.2 91549 2bgiA 272 89.26 1znwA 207 89.77 c.37.1.1 125412